miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24854 3' -60.9 NC_005284.1 + 23830 0.68 0.333875
Target:  5'- aGCCGAcgGCGGCcuacauugggugaucGCCGGCGgCGAaaGCGGc- -3'
miRNA:   3'- -CGGCU--UGUCG---------------UGGCCGC-GCU--CGCCcu -5'
24854 3' -60.9 NC_005284.1 + 22014 0.68 0.31561
Target:  5'- -aCGAGaaacagGGCgACCGGCGUGcguGCGGGAa -3'
miRNA:   3'- cgGCUUg-----UCG-UGGCCGCGCu--CGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 38482 0.68 0.314865
Target:  5'- cGCCGAugacgaGCGGCACCGGCucgcccuGCGcAGCGcuguucacGGGu -3'
miRNA:   3'- -CGGCU------UGUCGUGGCCG-------CGC-UCGC--------CCU- -5'
24854 3' -60.9 NC_005284.1 + 49355 0.68 0.308225
Target:  5'- aCCGAacuaucggucGCAGCuucGCCGaGCGCGAGCuGGc -3'
miRNA:   3'- cGGCU----------UGUCG---UGGC-CGCGCUCGcCCu -5'
24854 3' -60.9 NC_005284.1 + 50891 0.68 0.308225
Target:  5'- uUCGGGCGGC-UCGGCGCauucaucgaGAGCGGaGAu -3'
miRNA:   3'- cGGCUUGUCGuGGCCGCG---------CUCGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 11804 0.69 0.300973
Target:  5'- gGCCGAggcGgAGCAggUCGcGCGCGAGCGcGGc -3'
miRNA:   3'- -CGGCU---UgUCGU--GGC-CGCGCUCGC-CCu -5'
24854 3' -60.9 NC_005284.1 + 957 0.69 0.298823
Target:  5'- uGCCGAGguGUacGCCGGCGCGAcgacugaaaagcagGCcuGGAg -3'
miRNA:   3'- -CGGCUUguCG--UGGCCGCGCU--------------CGc-CCU- -5'
24854 3' -60.9 NC_005284.1 + 29199 0.69 0.293853
Target:  5'- cGUCGAAacaguCGGCaACCGccGCGCGgacGGCGGGAu -3'
miRNA:   3'- -CGGCUU-----GUCG-UGGC--CGCGC---UCGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 45614 0.69 0.286865
Target:  5'- uGCCGGACGagGgCGGUGCGAgucuucGCGGGGc -3'
miRNA:   3'- -CGGCUUGUcgUgGCCGCGCU------CGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 42028 0.69 0.280009
Target:  5'- -gCGAGCGcGUGCCGGC-CGAGCGGc- -3'
miRNA:   3'- cgGCUUGU-CGUGGCCGcGCUCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 3160 0.69 0.273284
Target:  5'- aGCCGAGCaAGCAgacagUCGaGCGCGAGguucgaaaugcCGGGGa -3'
miRNA:   3'- -CGGCUUG-UCGU-----GGC-CGCGCUC-----------GCCCU- -5'
24854 3' -60.9 NC_005284.1 + 22007 0.69 0.273284
Target:  5'- gGCCG-AC-GCACCGGCagaggcgcGCGAGCGcGAc -3'
miRNA:   3'- -CGGCuUGuCGUGGCCG--------CGCUCGCcCU- -5'
24854 3' -60.9 NC_005284.1 + 12383 0.7 0.260223
Target:  5'- gGCgGGagcGCGGgaggaggggauuCGCCGGCGCGcaacGGCGGGAu -3'
miRNA:   3'- -CGgCU---UGUC------------GUGGCCGCGC----UCGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 27665 0.7 0.260223
Target:  5'- cGCCGcuauACGG-GCCGGCGUGGcgcGCGGGu -3'
miRNA:   3'- -CGGCu---UGUCgUGGCCGCGCU---CGCCCu -5'
24854 3' -60.9 NC_005284.1 + 22747 0.7 0.253885
Target:  5'- gGCCGAGCGGCugCGGU-CGAucaaGGGGc -3'
miRNA:   3'- -CGGCUUGUCGugGCCGcGCUcg--CCCU- -5'
24854 3' -60.9 NC_005284.1 + 33127 0.7 0.253885
Target:  5'- cGCCGAcgcgGCGGCAUCGuGCGCG-GCGa-- -3'
miRNA:   3'- -CGGCU----UGUCGUGGC-CGCGCuCGCccu -5'
24854 3' -60.9 NC_005284.1 + 49014 0.7 0.229797
Target:  5'- aGUCaGACAGCA-CGGCGaCGAGCGGa- -3'
miRNA:   3'- -CGGcUUGUCGUgGCCGC-GCUCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 9348 0.71 0.202431
Target:  5'- aGUCGGAUcaAGCgACgGGCGCGAGCGcGAg -3'
miRNA:   3'- -CGGCUUG--UCG-UGgCCGCGCUCGCcCU- -5'
24854 3' -60.9 NC_005284.1 + 4634 0.72 0.173368
Target:  5'- -aCGGuCGGCAgCGGCGUGAGCGGc- -3'
miRNA:   3'- cgGCUuGUCGUgGCCGCGCUCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 12040 0.72 0.173368
Target:  5'- cGCCGAccucgcGCGGUuuUCGGCGCGuGCGGcGAu -3'
miRNA:   3'- -CGGCU------UGUCGu-GGCCGCGCuCGCC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.