miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24854 3' -60.9 NC_005284.1 + 182 0.67 0.354523
Target:  5'- cGCCGGACuggauugucGGCGa-GGCGCGGggcauGUGGGAg -3'
miRNA:   3'- -CGGCUUG---------UCGUggCCGCGCU-----CGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 957 0.69 0.298823
Target:  5'- uGCCGAGguGUacGCCGGCGCGAcgacugaaaagcagGCcuGGAg -3'
miRNA:   3'- -CGGCUUguCG--UGGCCGCGCU--------------CGc-CCU- -5'
24854 3' -60.9 NC_005284.1 + 1210 0.66 0.405514
Target:  5'- uGCUGAcCGGCAUgGGCGCGcGCcGGc -3'
miRNA:   3'- -CGGCUuGUCGUGgCCGCGCuCGcCCu -5'
24854 3' -60.9 NC_005284.1 + 3160 0.69 0.273284
Target:  5'- aGCCGAGCaAGCAgacagUCGaGCGCGAGguucgaaaugcCGGGGa -3'
miRNA:   3'- -CGGCUUG-UCGU-----GGC-CGCGCUC-----------GCCCU- -5'
24854 3' -60.9 NC_005284.1 + 4468 0.66 0.460882
Target:  5'- gGCCGAGCAaaaGCUGGCucGCG-GCGGcGGu -3'
miRNA:   3'- -CGGCUUGUcg-UGGCCG--CGCuCGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 4634 0.72 0.173368
Target:  5'- -aCGGuCGGCAgCGGCGUGAGCGGc- -3'
miRNA:   3'- cgGCUuGUCGUgGCCGCGCUCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 9232 0.66 0.414451
Target:  5'- cGUCGA--GGCGCUGacGCGCGcGGCGGGc -3'
miRNA:   3'- -CGGCUugUCGUGGC--CGCGC-UCGCCCu -5'
24854 3' -60.9 NC_005284.1 + 9348 0.71 0.202431
Target:  5'- aGUCGGAUcaAGCgACgGGCGCGAGCGcGAg -3'
miRNA:   3'- -CGGCUUG--UCG-UGgCCGCGCUCGCcCU- -5'
24854 3' -60.9 NC_005284.1 + 11804 0.69 0.300973
Target:  5'- gGCCGAggcGgAGCAggUCGcGCGCGAGCGcGGc -3'
miRNA:   3'- -CGGCU---UgUCGU--GGC-CGCGCUCGC-CCu -5'
24854 3' -60.9 NC_005284.1 + 11864 0.74 0.140431
Target:  5'- gGCCGAcUGGCGCguCGGCGUGAaGCGGGc -3'
miRNA:   3'- -CGGCUuGUCGUG--GCCGCGCU-CGCCCu -5'
24854 3' -60.9 NC_005284.1 + 12040 0.72 0.173368
Target:  5'- cGCCGAccucgcGCGGUuuUCGGCGCGuGCGGcGAu -3'
miRNA:   3'- -CGGCU------UGUCGu-GGCCGCGCuCGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 12383 0.7 0.260223
Target:  5'- gGCgGGagcGCGGgaggaggggauuCGCCGGCGCGcaacGGCGGGAu -3'
miRNA:   3'- -CGgCU---UGUC------------GUGGCCGCGC----UCGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 14695 0.66 0.432683
Target:  5'- uGCCGAcGCAGCAgUGGCGgauCGAGCa--- -3'
miRNA:   3'- -CGGCU-UGUCGUgGCCGC---GCUCGcccu -5'
24854 3' -60.9 NC_005284.1 + 16989 0.66 0.460882
Target:  5'- cGCCGAACGcGCACaCGGCGaCGAucgccgacGCGa-- -3'
miRNA:   3'- -CGGCUUGU-CGUG-GCCGC-GCU--------CGCccu -5'
24854 3' -60.9 NC_005284.1 + 17701 0.66 0.451373
Target:  5'- cGCCcuGAAUcuCGCCGGCGCGucgauGGCGGu- -3'
miRNA:   3'- -CGG--CUUGucGUGGCCGCGC-----UCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 20826 0.82 0.036386
Target:  5'- cCCGcAGCAGCGCCGGcCGaCGAGCGGGc -3'
miRNA:   3'- cGGC-UUGUCGUGGCC-GC-GCUCGCCCu -5'
24854 3' -60.9 NC_005284.1 + 21309 0.66 0.423508
Target:  5'- uGUCGGcaGCAGCGCCGGC-CGA-CGGc- -3'
miRNA:   3'- -CGGCU--UGUCGUGGCCGcGCUcGCCcu -5'
24854 3' -60.9 NC_005284.1 + 21414 0.74 0.133142
Target:  5'- aGCCGucgGCAGCGCCGGCcgacgaaCGGGCGGu- -3'
miRNA:   3'- -CGGCu--UGUCGUGGCCGc------GCUCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 22007 0.69 0.273284
Target:  5'- gGCCG-AC-GCACCGGCagaggcgcGCGAGCGcGAc -3'
miRNA:   3'- -CGGCuUGuCGUGGCCG--------CGCUCGCcCU- -5'
24854 3' -60.9 NC_005284.1 + 22014 0.68 0.31561
Target:  5'- -aCGAGaaacagGGCgACCGGCGUGcguGCGGGAa -3'
miRNA:   3'- cgGCUUg-----UCG-UGGCCGCGCu--CGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.