miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24854 3' -60.9 NC_005284.1 + 22079 0.66 0.459927
Target:  5'- gGCCGGACugcgcgacggaaaAGCGCuUGGCGCuuGCGGu- -3'
miRNA:   3'- -CGGCUUG-------------UCGUG-GCCGCGcuCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 22130 0.66 0.432683
Target:  5'- cGCCGAugcgggagagGCGGCAgCguGGCGCuaucgaacGAGCGGcGAu -3'
miRNA:   3'- -CGGCU----------UGUCGUgG--CCGCG--------CUCGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 22747 0.7 0.253885
Target:  5'- gGCCGAGCGGCugCGGU-CGAucaaGGGGc -3'
miRNA:   3'- -CGGCUUGUCGugGCCGcGCUcg--CCCU- -5'
24854 3' -60.9 NC_005284.1 + 23589 0.67 0.3967
Target:  5'- gGUCGAGCGGUucAUCGaCGCG-GCGGGu -3'
miRNA:   3'- -CGGCUUGUCG--UGGCcGCGCuCGCCCu -5'
24854 3' -60.9 NC_005284.1 + 23830 0.68 0.333875
Target:  5'- aGCCGAcgGCGGCcuacauugggugaucGCCGGCGgCGAaaGCGGc- -3'
miRNA:   3'- -CGGCU--UGUCG---------------UGGCCGC-GCU--CGCCcu -5'
24854 3' -60.9 NC_005284.1 + 23892 0.66 0.414451
Target:  5'- aGCgGGGCAGUGCUGGgGgauCGAGCcGGAa -3'
miRNA:   3'- -CGgCUUGUCGUGGCCgC---GCUCGcCCU- -5'
24854 3' -60.9 NC_005284.1 + 26554 0.66 0.423508
Target:  5'- gGgCGGGCAGUaggugGCCGGCGaGAGUGGc- -3'
miRNA:   3'- -CgGCUUGUCG-----UGGCCGCgCUCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 27665 0.7 0.260223
Target:  5'- cGCCGcuauACGG-GCCGGCGUGGcgcGCGGGu -3'
miRNA:   3'- -CGGCu---UGUCgUGGCCGCGCU---CGCCCu -5'
24854 3' -60.9 NC_005284.1 + 29199 0.69 0.293853
Target:  5'- cGUCGAAacaguCGGCaACCGccGCGCGgacGGCGGGAu -3'
miRNA:   3'- -CGGCUU-----GUCG-UGGC--CGCGC---UCGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 29744 1.1 0.000258
Target:  5'- cGCCGAACAGCACCGGCGCGAGCGGGAu -3'
miRNA:   3'- -CGGCUUGUCGUGGCCGCGCUCGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 33127 0.7 0.253885
Target:  5'- cGCCGAcgcgGCGGCAUCGuGCGCG-GCGa-- -3'
miRNA:   3'- -CGGCU----UGUCGUGGC-CGCGCuCGCccu -5'
24854 3' -60.9 NC_005284.1 + 38482 0.68 0.314865
Target:  5'- cGCCGAugacgaGCGGCACCGGCucgcccuGCGcAGCGcuguucacGGGu -3'
miRNA:   3'- -CGGCU------UGUCGUGGCCG-------CGC-UCGC--------CCU- -5'
24854 3' -60.9 NC_005284.1 + 38881 0.66 0.430838
Target:  5'- aGCCGGgaauCAGCACCGauaGCGCGcgcaccgccucuGCGGcGAc -3'
miRNA:   3'- -CGGCUu---GUCGUGGC---CGCGCu-----------CGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 42028 0.69 0.280009
Target:  5'- -gCGAGCGcGUGCCGGC-CGAGCGGc- -3'
miRNA:   3'- cgGCUUGU-CGUGGCCGcGCUCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 44864 0.68 0.346476
Target:  5'- cGCCGuACGccGCugCuGCGCGAGCGcGAg -3'
miRNA:   3'- -CGGCuUGU--CGugGcCGCGCUCGCcCU- -5'
24854 3' -60.9 NC_005284.1 + 45614 0.69 0.286865
Target:  5'- uGCCGGACGagGgCGGUGCGAgucuucGCGGGGc -3'
miRNA:   3'- -CGGCUUGUcgUgGCCGCGCU------CGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 46195 0.66 0.404627
Target:  5'- cGCCGAACgcgcagccucccgAGUcgugggagaACUGGCcgaccGCGGGUGGGAu -3'
miRNA:   3'- -CGGCUUG-------------UCG---------UGGCCG-----CGCUCGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 46548 0.66 0.441972
Target:  5'- uGCCGAGCcGCA---GCGCGAGCGacaucaGGAa -3'
miRNA:   3'- -CGGCUUGuCGUggcCGCGCUCGC------CCU- -5'
24854 3' -60.9 NC_005284.1 + 46576 0.67 0.362701
Target:  5'- uGCCGAGCA-UGgCGGCGC-AGUGGGc -3'
miRNA:   3'- -CGGCUUGUcGUgGCCGCGcUCGCCCu -5'
24854 3' -60.9 NC_005284.1 + 49014 0.7 0.229797
Target:  5'- aGUCaGACAGCA-CGGCGaCGAGCGGa- -3'
miRNA:   3'- -CGGcUUGUCGUgGCCGC-GCUCGCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.