Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24854 | 3' | -60.9 | NC_005284.1 | + | 50092 | 0.66 | 0.405514 |
Target: 5'- aGCCGAACAGCAUCGagaaCGUaacGCGGcGAu -3' miRNA: 3'- -CGGCUUGUCGUGGCc---GCGcu-CGCC-CU- -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 50891 | 0.68 | 0.308225 |
Target: 5'- uUCGGGCGGC-UCGGCGCauucaucgaGAGCGGaGAu -3' miRNA: 3'- cGGCUUGUCGuGGCCGCG---------CUCGCC-CU- -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 49355 | 0.68 | 0.308225 |
Target: 5'- aCCGAacuaucggucGCAGCuucGCCGaGCGCGAGCuGGc -3' miRNA: 3'- cGGCU----------UGUCG---UGGC-CGCGCUCGcCCu -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 22014 | 0.68 | 0.31561 |
Target: 5'- -aCGAGaaacagGGCgACCGGCGUGcguGCGGGAa -3' miRNA: 3'- cgGCUUg-----UCG-UGGCCGCGCu--CGCCCU- -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 182 | 0.67 | 0.354523 |
Target: 5'- cGCCGGACuggauugucGGCGa-GGCGCGGggcauGUGGGAg -3' miRNA: 3'- -CGGCUUG---------UCGUggCCGCGCU-----CGCCCU- -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 46576 | 0.67 | 0.362701 |
Target: 5'- uGCCGAGCA-UGgCGGCGC-AGUGGGc -3' miRNA: 3'- -CGGCUUGUcGUgGCCGCGcUCGCCCu -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 23589 | 0.67 | 0.3967 |
Target: 5'- gGUCGAGCGGUucAUCGaCGCG-GCGGGu -3' miRNA: 3'- -CGGCUUGUCG--UGGCcGCGCuCGCCCu -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 46195 | 0.66 | 0.404627 |
Target: 5'- cGCCGAACgcgcagccucccgAGUcgugggagaACUGGCcgaccGCGGGUGGGAu -3' miRNA: 3'- -CGGCUUG-------------UCG---------UGGCCG-----CGCUCGCCCU- -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 1210 | 0.66 | 0.405514 |
Target: 5'- uGCUGAcCGGCAUgGGCGCGcGCcGGc -3' miRNA: 3'- -CGGCUuGUCGUGgCCGCGCuCGcCCu -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 11804 | 0.69 | 0.300973 |
Target: 5'- gGCCGAggcGgAGCAggUCGcGCGCGAGCGcGGc -3' miRNA: 3'- -CGGCU---UgUCGU--GGC-CGCGCUCGC-CCu -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 957 | 0.69 | 0.298823 |
Target: 5'- uGCCGAGguGUacGCCGGCGCGAcgacugaaaagcagGCcuGGAg -3' miRNA: 3'- -CGGCUUguCG--UGGCCGCGCU--------------CGc-CCU- -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 45614 | 0.69 | 0.286865 |
Target: 5'- uGCCGGACGagGgCGGUGCGAgucuucGCGGGGc -3' miRNA: 3'- -CGGCUUGUcgUgGCCGCGCU------CGCCCU- -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 4634 | 0.72 | 0.173368 |
Target: 5'- -aCGGuCGGCAgCGGCGUGAGCGGc- -3' miRNA: 3'- cgGCUuGUCGUgGCCGCGCUCGCCcu -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 12040 | 0.72 | 0.173368 |
Target: 5'- cGCCGAccucgcGCGGUuuUCGGCGCGuGCGGcGAu -3' miRNA: 3'- -CGGCU------UGUCGu-GGCCGCGCuCGCC-CU- -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 9348 | 0.71 | 0.202431 |
Target: 5'- aGUCGGAUcaAGCgACgGGCGCGAGCGcGAg -3' miRNA: 3'- -CGGCUUG--UCG-UGgCCGCGCUCGCcCU- -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 49014 | 0.7 | 0.229797 |
Target: 5'- aGUCaGACAGCA-CGGCGaCGAGCGGa- -3' miRNA: 3'- -CGGcUUGUCGUgGCCGC-GCUCGCCcu -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 22747 | 0.7 | 0.253885 |
Target: 5'- gGCCGAGCGGCugCGGU-CGAucaaGGGGc -3' miRNA: 3'- -CGGCUUGUCGugGCCGcGCUcg--CCCU- -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 12383 | 0.7 | 0.260223 |
Target: 5'- gGCgGGagcGCGGgaggaggggauuCGCCGGCGCGcaacGGCGGGAu -3' miRNA: 3'- -CGgCU---UGUC------------GUGGCCGCGC----UCGCCCU- -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 27665 | 0.7 | 0.260223 |
Target: 5'- cGCCGcuauACGG-GCCGGCGUGGcgcGCGGGu -3' miRNA: 3'- -CGGCu---UGUCgUGGCCGCGCU---CGCCCu -5' |
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24854 | 3' | -60.9 | NC_005284.1 | + | 42028 | 0.69 | 0.280009 |
Target: 5'- -gCGAGCGcGUGCCGGC-CGAGCGGc- -3' miRNA: 3'- cgGCUUGU-CGUGGCCGcGCUCGCCcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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