miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24854 3' -60.9 NC_005284.1 + 22079 0.66 0.459927
Target:  5'- gGCCGGACugcgcgacggaaaAGCGCuUGGCGCuuGCGGu- -3'
miRNA:   3'- -CGGCUUG-------------UCGUG-GCCGCGcuCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 22007 0.69 0.273284
Target:  5'- gGCCG-AC-GCACCGGCagaggcgcGCGAGCGcGAc -3'
miRNA:   3'- -CGGCuUGuCGUGGCCG--------CGCUCGCcCU- -5'
24854 3' -60.9 NC_005284.1 + 38482 0.68 0.314865
Target:  5'- cGCCGAugacgaGCGGCACCGGCucgcccuGCGcAGCGcuguucacGGGu -3'
miRNA:   3'- -CGGCU------UGUCGUGGCCG-------CGC-UCGC--------CCU- -5'
24854 3' -60.9 NC_005284.1 + 23830 0.68 0.333875
Target:  5'- aGCCGAcgGCGGCcuacauugggugaucGCCGGCGgCGAaaGCGGc- -3'
miRNA:   3'- -CGGCU--UGUCG---------------UGGCCGC-GCU--CGCCcu -5'
24854 3' -60.9 NC_005284.1 + 21309 0.66 0.423508
Target:  5'- uGUCGGcaGCAGCGCCGGC-CGA-CGGc- -3'
miRNA:   3'- -CGGCU--UGUCGUGGCCGcGCUcGCCcu -5'
24854 3' -60.9 NC_005284.1 + 38881 0.66 0.430838
Target:  5'- aGCCGGgaauCAGCACCGauaGCGCGcgcaccgccucuGCGGcGAc -3'
miRNA:   3'- -CGGCUu---GUCGUGGC---CGCGCu-----------CGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 21414 0.74 0.133142
Target:  5'- aGCCGucgGCAGCGCCGGCcgacgaaCGGGCGGu- -3'
miRNA:   3'- -CGGCu--UGUCGUGGCCGc------GCUCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 3160 0.69 0.273284
Target:  5'- aGCCGAGCaAGCAgacagUCGaGCGCGAGguucgaaaugcCGGGGa -3'
miRNA:   3'- -CGGCUUG-UCGU-----GGC-CGCGCUC-----------GCCCU- -5'
24854 3' -60.9 NC_005284.1 + 44864 0.68 0.346476
Target:  5'- cGCCGuACGccGCugCuGCGCGAGCGcGAg -3'
miRNA:   3'- -CGGCuUGU--CGugGcCGCGCUCGCcCU- -5'
24854 3' -60.9 NC_005284.1 + 22130 0.66 0.432683
Target:  5'- cGCCGAugcgggagagGCGGCAgCguGGCGCuaucgaacGAGCGGcGAu -3'
miRNA:   3'- -CGGCU----------UGUCGUgG--CCGCG--------CUCGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 17701 0.66 0.451373
Target:  5'- cGCCcuGAAUcuCGCCGGCGCGucgauGGCGGu- -3'
miRNA:   3'- -CGG--CUUGucGUGGCCGCGC-----UCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 20826 0.82 0.036386
Target:  5'- cCCGcAGCAGCGCCGGcCGaCGAGCGGGc -3'
miRNA:   3'- cGGC-UUGUCGUGGCC-GC-GCUCGCCCu -5'
24854 3' -60.9 NC_005284.1 + 46548 0.66 0.441972
Target:  5'- uGCCGAGCcGCA---GCGCGAGCGacaucaGGAa -3'
miRNA:   3'- -CGGCUUGuCGUggcCGCGCUCGC------CCU- -5'
24854 3' -60.9 NC_005284.1 + 29199 0.69 0.293853
Target:  5'- cGUCGAAacaguCGGCaACCGccGCGCGgacGGCGGGAu -3'
miRNA:   3'- -CGGCUU-----GUCG-UGGC--CGCGC---UCGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 29744 1.1 0.000258
Target:  5'- cGCCGAACAGCACCGGCGCGAGCGGGAu -3'
miRNA:   3'- -CGGCUUGUCGUGGCCGCGCUCGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 33127 0.7 0.253885
Target:  5'- cGCCGAcgcgGCGGCAUCGuGCGCG-GCGa-- -3'
miRNA:   3'- -CGGCU----UGUCGUGGC-CGCGCuCGCccu -5'
24854 3' -60.9 NC_005284.1 + 22014 0.68 0.31561
Target:  5'- -aCGAGaaacagGGCgACCGGCGUGcguGCGGGAa -3'
miRNA:   3'- cgGCUUg-----UCG-UGGCCGCGCu--CGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 49355 0.68 0.308225
Target:  5'- aCCGAacuaucggucGCAGCuucGCCGaGCGCGAGCuGGc -3'
miRNA:   3'- cGGCU----------UGUCG---UGGC-CGCGCUCGcCCu -5'
24854 3' -60.9 NC_005284.1 + 50891 0.68 0.308225
Target:  5'- uUCGGGCGGC-UCGGCGCauucaucgaGAGCGGaGAu -3'
miRNA:   3'- cGGCUUGUCGuGGCCGCG---------CUCGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 11804 0.69 0.300973
Target:  5'- gGCCGAggcGgAGCAggUCGcGCGCGAGCGcGGc -3'
miRNA:   3'- -CGGCU---UgUCGU--GGC-CGCGCUCGC-CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.