miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24855 5' -52.7 NC_005284.1 + 49386 0.66 0.850329
Target:  5'- -----cGAGCuGGCGCGCcGCACGGg-- -3'
miRNA:   3'- uuuuauCUCG-CUGCGCG-CGUGCUgcu -5'
24855 5' -52.7 NC_005284.1 + 23346 0.66 0.850329
Target:  5'- ----gGGGGCccGGCGCGCcGCAgCGGCGc -3'
miRNA:   3'- uuuuaUCUCG--CUGCGCG-CGU-GCUGCu -5'
24855 5' -52.7 NC_005284.1 + 30414 0.66 0.850329
Target:  5'- -----cGAuCGucCGCGUGCGCGACGGc -3'
miRNA:   3'- uuuuauCUcGCu-GCGCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 21650 0.66 0.850329
Target:  5'- -----cGuGCGAuCGcCGCGCACGAUGc -3'
miRNA:   3'- uuuuauCuCGCU-GC-GCGCGUGCUGCu -5'
24855 5' -52.7 NC_005284.1 + 9351 0.66 0.850329
Target:  5'- cGGAUcaAGCGACGgGCGCgaGCG-CGAg -3'
miRNA:   3'- uUUUAucUCGCUGCgCGCG--UGCuGCU- -5'
24855 5' -52.7 NC_005284.1 + 23078 0.66 0.850329
Target:  5'- -uGGUGGcGGCGACGCugguaGCAUGugGGg -3'
miRNA:   3'- uuUUAUC-UCGCUGCGcg---CGUGCugCU- -5'
24855 5' -52.7 NC_005284.1 + 9907 0.66 0.832432
Target:  5'- -----uGAGCGACgGCGUGCGcCGuauCGAg -3'
miRNA:   3'- uuuuauCUCGCUG-CGCGCGU-GCu--GCU- -5'
24855 5' -52.7 NC_005284.1 + 9236 0.66 0.832432
Target:  5'- ----gAG-GCGcUGaCGCGCGCGGCGGg -3'
miRNA:   3'- uuuuaUCuCGCuGC-GCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 404 0.66 0.832432
Target:  5'- ----aGGaAGCGGCG-GCGCAaaUGGCGAg -3'
miRNA:   3'- uuuuaUC-UCGCUGCgCGCGU--GCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9822 0.66 0.832432
Target:  5'- ----aGGAaauCGGCGCGCGCAUcACGGg -3'
miRNA:   3'- uuuuaUCUc--GCUGCGCGCGUGcUGCU- -5'
24855 5' -52.7 NC_005284.1 + 12983 0.66 0.823146
Target:  5'- gGAAGUGGcGGCGacaacaaccGCGuCGCGCACaucaaGACGAa -3'
miRNA:   3'- -UUUUAUC-UCGC---------UGC-GCGCGUG-----CUGCU- -5'
24855 5' -52.7 NC_005284.1 + 7443 0.66 0.823146
Target:  5'- aGAAAUcGAcGCGACGacguuCGCGaGCGACGAa -3'
miRNA:   3'- -UUUUAuCU-CGCUGC-----GCGCgUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9674 0.66 0.81365
Target:  5'- -----cGAGCGAUGCGCGaaaGCcuuGCGAu -3'
miRNA:   3'- uuuuauCUCGCUGCGCGCg--UGc--UGCU- -5'
24855 5' -52.7 NC_005284.1 + 3838 0.66 0.81365
Target:  5'- uGAAGUAGAGaUGA-GCGCuCACGACa- -3'
miRNA:   3'- -UUUUAUCUC-GCUgCGCGcGUGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 26396 0.66 0.802974
Target:  5'- ----cGGcAGCGugGCuGCGCcgcuucgagguggGCGACGAc -3'
miRNA:   3'- uuuuaUC-UCGCugCG-CGCG-------------UGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 10376 0.67 0.794069
Target:  5'- aGGAAUcuGAGCGGC-UGCGCACGAagcaaGAg -3'
miRNA:   3'- -UUUUAu-CUCGCUGcGCGCGUGCUg----CU- -5'
24855 5' -52.7 NC_005284.1 + 10460 0.67 0.784006
Target:  5'- ----cAGAGCGAuuucgagugcCGCGgGCAUGGCa- -3'
miRNA:   3'- uuuuaUCUCGCU----------GCGCgCGUGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 10640 0.67 0.784006
Target:  5'- -----cGAGCGGCggcgaaGCGCuGCGCGAgGAa -3'
miRNA:   3'- uuuuauCUCGCUG------CGCG-CGUGCUgCU- -5'
24855 5' -52.7 NC_005284.1 + 38848 0.67 0.773778
Target:  5'- ------cGGCGuCGCGCGC-CGACGu -3'
miRNA:   3'- uuuuaucUCGCuGCGCGCGuGCUGCu -5'
24855 5' -52.7 NC_005284.1 + 25519 0.67 0.772746
Target:  5'- uGGAAUcGGAGCGGCcgucgucGUGCGCGCGuCGc -3'
miRNA:   3'- -UUUUA-UCUCGCUG-------CGCGCGUGCuGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.