miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24855 5' -52.7 NC_005284.1 + 29250 1.07 0.002525
Target:  5'- cAAAAUAGAGCGACGCGCGCACGACGAc -3'
miRNA:   3'- -UUUUAUCUCGCUGCGCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 47807 0.75 0.336432
Target:  5'- -----cGAGCGcgccauguACGCGCGuCACGACGAa -3'
miRNA:   3'- uuuuauCUCGC--------UGCGCGC-GUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 49315 0.75 0.342308
Target:  5'- gAGGGUAcGGCGAugguuggcacggcaCGCGUGCGCGACGAc -3'
miRNA:   3'- -UUUUAUcUCGCU--------------GCGCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 19717 0.75 0.34485
Target:  5'- ----cGGAGCGGCGCGCcucauGCuCGACGGa -3'
miRNA:   3'- uuuuaUCUCGCUGCGCG-----CGuGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9234 0.75 0.353418
Target:  5'- -----cGGGCGACGCGCcaCGCGGCGGc -3'
miRNA:   3'- uuuuauCUCGCUGCGCGc-GUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 31431 0.74 0.389174
Target:  5'- -----cGGGCGACGUGCGCcgcuGCGGCGc -3'
miRNA:   3'- uuuuauCUCGCUGCGCGCG----UGCUGCu -5'
24855 5' -52.7 NC_005284.1 + 50321 0.74 0.398476
Target:  5'- cGAAGUAuuuGGCGGCGUGC-CGCGGCGAa -3'
miRNA:   3'- -UUUUAUc--UCGCUGCGCGcGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 6826 0.73 0.436079
Target:  5'- ----gGGGGCGAUucgcaccgaguugGCGCGCGCGAuCGAu -3'
miRNA:   3'- uuuuaUCUCGCUG-------------CGCGCGUGCU-GCU- -5'
24855 5' -52.7 NC_005284.1 + 31620 0.73 0.447049
Target:  5'- -----cGAGCGgaACGCGC-CGCGACGAu -3'
miRNA:   3'- uuuuauCUCGC--UGCGCGcGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 45142 0.72 0.467381
Target:  5'- -uGAUGGgcaaGGCGugGuCGaCGCACGGCGAc -3'
miRNA:   3'- uuUUAUC----UCGCugC-GC-GCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 47746 0.72 0.477724
Target:  5'- -cGGUAcGGCGGCGCGCGUACGuccGCGu -3'
miRNA:   3'- uuUUAUcUCGCUGCGCGCGUGC---UGCu -5'
24855 5' -52.7 NC_005284.1 + 8002 0.72 0.509403
Target:  5'- -----cGAGUGACGaCGCGCACaugcaGGCGAa -3'
miRNA:   3'- uuuuauCUCGCUGC-GCGCGUG-----CUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9590 0.71 0.531004
Target:  5'- ----cAGGGCGAuCGCGCuGCcGCGGCGGc -3'
miRNA:   3'- uuuuaUCUCGCU-GCGCG-CG-UGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 18926 0.71 0.531004
Target:  5'- ----cGGAGCuGCGCGCGC-CGAuCGAc -3'
miRNA:   3'- uuuuaUCUCGcUGCGCGCGuGCU-GCU- -5'
24855 5' -52.7 NC_005284.1 + 39296 0.71 0.541929
Target:  5'- cGGGUAacGCGACGcCGCGCuCGGCGAg -3'
miRNA:   3'- uUUUAUcuCGCUGC-GCGCGuGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 51656 0.71 0.552928
Target:  5'- -------uGUGAaucaCGCGCGCGCGACGAu -3'
miRNA:   3'- uuuuaucuCGCU----GCGCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 48153 0.7 0.574001
Target:  5'- ----aAGAGCccauuccGGCGCGCGCugG-CGAa -3'
miRNA:   3'- uuuuaUCUCG-------CUGCGCGCGugCuGCU- -5'
24855 5' -52.7 NC_005284.1 + 19626 0.7 0.575116
Target:  5'- gGAAAcGGAGUG-CGgGUGUACGACGGc -3'
miRNA:   3'- -UUUUaUCUCGCuGCgCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 7865 0.7 0.586288
Target:  5'- cGGAAUGGAGUGGCgaaaagaucgcaGUGCGCGagcCGACGGu -3'
miRNA:   3'- -UUUUAUCUCGCUG------------CGCGCGU---GCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 16169 0.7 0.596377
Target:  5'- -uGAUGGGGCucGGCGCgucgaugGCGCugGGCGGc -3'
miRNA:   3'- uuUUAUCUCG--CUGCG-------CGCGugCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.