miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24855 5' -52.7 NC_005284.1 + 18962 0.7 0.608743
Target:  5'- --cAUGGccGGCGACGCaacgaucuacGCGgGCGACGAa -3'
miRNA:   3'- uuuUAUC--UCGCUGCG----------CGCgUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 22021 0.69 0.653825
Target:  5'- ----cAGAgGCG-CGCGaGCGCGACGAu -3'
miRNA:   3'- uuuuaUCU-CGCuGCGCgCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 54451 0.69 0.687452
Target:  5'- cAAAUGGAagucCGACGCgGUGCGCGGCa- -3'
miRNA:   3'- uUUUAUCUc---GCUGCG-CGCGUGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 10068 0.68 0.709611
Target:  5'- -----uGAGCGA-GCGgaaCGCGCGGCGAc -3'
miRNA:   3'- uuuuauCUCGCUgCGC---GCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 33130 0.68 0.709611
Target:  5'- -----cGAcGCGGCGgcauCGUGCGCGGCGAu -3'
miRNA:   3'- uuuuauCU-CGCUGC----GCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 23345 0.68 0.720577
Target:  5'- -uGAUGGcggaaAGCGGCgGCGUuggcccuacGCACGACGAg -3'
miRNA:   3'- uuUUAUC-----UCGCUG-CGCG---------CGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 44475 0.68 0.731451
Target:  5'- -uGAUcGAGCGGCGCcUGCAUGuCGAu -3'
miRNA:   3'- uuUUAuCUCGCUGCGcGCGUGCuGCU- -5'
24855 5' -52.7 NC_005284.1 + 7562 0.67 0.752873
Target:  5'- -------uGCGugcCGCGCGUGCGACGGg -3'
miRNA:   3'- uuuuaucuCGCu--GCGCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 44955 0.67 0.763396
Target:  5'- --cGUAGGGCGugcccgugauGCGCGCGC-CGAUu- -3'
miRNA:   3'- uuuUAUCUCGC----------UGCGCGCGuGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 25519 0.67 0.772746
Target:  5'- uGGAAUcGGAGCGGCcgucgucGUGCGCGCGuCGc -3'
miRNA:   3'- -UUUUA-UCUCGCUG-------CGCGCGUGCuGCu -5'
24855 5' -52.7 NC_005284.1 + 38848 0.67 0.773778
Target:  5'- ------cGGCGuCGCGCGC-CGACGu -3'
miRNA:   3'- uuuuaucUCGCuGCGCGCGuGCUGCu -5'
24855 5' -52.7 NC_005284.1 + 10460 0.67 0.784006
Target:  5'- ----cAGAGCGAuuucgagugcCGCGgGCAUGGCa- -3'
miRNA:   3'- uuuuaUCUCGCU----------GCGCgCGUGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 10640 0.67 0.784006
Target:  5'- -----cGAGCGGCggcgaaGCGCuGCGCGAgGAa -3'
miRNA:   3'- uuuuauCUCGCUG------CGCG-CGUGCUgCU- -5'
24855 5' -52.7 NC_005284.1 + 10376 0.67 0.794069
Target:  5'- aGGAAUcuGAGCGGC-UGCGCACGAagcaaGAg -3'
miRNA:   3'- -UUUUAu-CUCGCUGcGCGCGUGCUg----CU- -5'
24855 5' -52.7 NC_005284.1 + 26396 0.66 0.802974
Target:  5'- ----cGGcAGCGugGCuGCGCcgcuucgagguggGCGACGAc -3'
miRNA:   3'- uuuuaUC-UCGCugCG-CGCG-------------UGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9674 0.66 0.81365
Target:  5'- -----cGAGCGAUGCGCGaaaGCcuuGCGAu -3'
miRNA:   3'- uuuuauCUCGCUGCGCGCg--UGc--UGCU- -5'
24855 5' -52.7 NC_005284.1 + 3838 0.66 0.81365
Target:  5'- uGAAGUAGAGaUGA-GCGCuCACGACa- -3'
miRNA:   3'- -UUUUAUCUC-GCUgCGCGcGUGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 7443 0.66 0.823146
Target:  5'- aGAAAUcGAcGCGACGacguuCGCGaGCGACGAa -3'
miRNA:   3'- -UUUUAuCU-CGCUGC-----GCGCgUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 12983 0.66 0.823146
Target:  5'- gGAAGUGGcGGCGacaacaaccGCGuCGCGCACaucaaGACGAa -3'
miRNA:   3'- -UUUUAUC-UCGC---------UGC-GCGCGUG-----CUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9236 0.66 0.832432
Target:  5'- ----gAG-GCGcUGaCGCGCGCGGCGGg -3'
miRNA:   3'- uuuuaUCuCGCuGC-GCGCGUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.