miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24855 5' -52.7 NC_005284.1 + 44955 0.67 0.763396
Target:  5'- --cGUAGGGCGugcccgugauGCGCGCGC-CGAUu- -3'
miRNA:   3'- uuuUAUCUCGC----------UGCGCGCGuGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 7562 0.67 0.752873
Target:  5'- -------uGCGugcCGCGCGUGCGACGGg -3'
miRNA:   3'- uuuuaucuCGCu--GCGCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 44475 0.68 0.731451
Target:  5'- -uGAUcGAGCGGCGCcUGCAUGuCGAu -3'
miRNA:   3'- uuUUAuCUCGCUGCGcGCGUGCuGCU- -5'
24855 5' -52.7 NC_005284.1 + 23345 0.68 0.720577
Target:  5'- -uGAUGGcggaaAGCGGCgGCGUuggcccuacGCACGACGAg -3'
miRNA:   3'- uuUUAUC-----UCGCUG-CGCG---------CGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 10068 0.68 0.709611
Target:  5'- -----uGAGCGA-GCGgaaCGCGCGGCGAc -3'
miRNA:   3'- uuuuauCUCGCUgCGC---GCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 33130 0.68 0.709611
Target:  5'- -----cGAcGCGGCGgcauCGUGCGCGGCGAu -3'
miRNA:   3'- uuuuauCU-CGCUGC----GCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 54451 0.69 0.687452
Target:  5'- cAAAUGGAagucCGACGCgGUGCGCGGCa- -3'
miRNA:   3'- uUUUAUCUc---GCUGCG-CGCGUGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 22021 0.69 0.653825
Target:  5'- ----cAGAgGCG-CGCGaGCGCGACGAu -3'
miRNA:   3'- uuuuaUCU-CGCuGCGCgCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 18962 0.7 0.608743
Target:  5'- --cAUGGccGGCGACGCaacgaucuacGCGgGCGACGAa -3'
miRNA:   3'- uuuUAUC--UCGCUGCG----------CGCgUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 16169 0.7 0.596377
Target:  5'- -uGAUGGGGCucGGCGCgucgaugGCGCugGGCGGc -3'
miRNA:   3'- uuUUAUCUCG--CUGCG-------CGCGugCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 7865 0.7 0.586288
Target:  5'- cGGAAUGGAGUGGCgaaaagaucgcaGUGCGCGagcCGACGGu -3'
miRNA:   3'- -UUUUAUCUCGCUG------------CGCGCGU---GCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 19626 0.7 0.575116
Target:  5'- gGAAAcGGAGUG-CGgGUGUACGACGGc -3'
miRNA:   3'- -UUUUaUCUCGCuGCgCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 48153 0.7 0.574001
Target:  5'- ----aAGAGCccauuccGGCGCGCGCugG-CGAa -3'
miRNA:   3'- uuuuaUCUCG-------CUGCGCGCGugCuGCU- -5'
24855 5' -52.7 NC_005284.1 + 51656 0.71 0.552928
Target:  5'- -------uGUGAaucaCGCGCGCGCGACGAu -3'
miRNA:   3'- uuuuaucuCGCU----GCGCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 39296 0.71 0.541929
Target:  5'- cGGGUAacGCGACGcCGCGCuCGGCGAg -3'
miRNA:   3'- uUUUAUcuCGCUGC-GCGCGuGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9590 0.71 0.531004
Target:  5'- ----cAGGGCGAuCGCGCuGCcGCGGCGGc -3'
miRNA:   3'- uuuuaUCUCGCU-GCGCG-CG-UGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 18926 0.71 0.531004
Target:  5'- ----cGGAGCuGCGCGCGC-CGAuCGAc -3'
miRNA:   3'- uuuuaUCUCGcUGCGCGCGuGCU-GCU- -5'
24855 5' -52.7 NC_005284.1 + 8002 0.72 0.509403
Target:  5'- -----cGAGUGACGaCGCGCACaugcaGGCGAa -3'
miRNA:   3'- uuuuauCUCGCUGC-GCGCGUG-----CUGCU- -5'
24855 5' -52.7 NC_005284.1 + 47746 0.72 0.477724
Target:  5'- -cGGUAcGGCGGCGCGCGUACGuccGCGu -3'
miRNA:   3'- uuUUAUcUCGCUGCGCGCGUGC---UGCu -5'
24855 5' -52.7 NC_005284.1 + 45142 0.72 0.467381
Target:  5'- -uGAUGGgcaaGGCGugGuCGaCGCACGGCGAc -3'
miRNA:   3'- uuUUAUC----UCGCugC-GC-GCGUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.