miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24855 5' -52.7 NC_005284.1 + 404 0.66 0.832432
Target:  5'- ----aGGaAGCGGCG-GCGCAaaUGGCGAg -3'
miRNA:   3'- uuuuaUC-UCGCUGCgCGCGU--GCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 3838 0.66 0.81365
Target:  5'- uGAAGUAGAGaUGA-GCGCuCACGACa- -3'
miRNA:   3'- -UUUUAUCUC-GCUgCGCGcGUGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 6826 0.73 0.436079
Target:  5'- ----gGGGGCGAUucgcaccgaguugGCGCGCGCGAuCGAu -3'
miRNA:   3'- uuuuaUCUCGCUG-------------CGCGCGUGCU-GCU- -5'
24855 5' -52.7 NC_005284.1 + 7443 0.66 0.823146
Target:  5'- aGAAAUcGAcGCGACGacguuCGCGaGCGACGAa -3'
miRNA:   3'- -UUUUAuCU-CGCUGC-----GCGCgUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 7562 0.67 0.752873
Target:  5'- -------uGCGugcCGCGCGUGCGACGGg -3'
miRNA:   3'- uuuuaucuCGCu--GCGCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 7865 0.7 0.586288
Target:  5'- cGGAAUGGAGUGGCgaaaagaucgcaGUGCGCGagcCGACGGu -3'
miRNA:   3'- -UUUUAUCUCGCUG------------CGCGCGU---GCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 8002 0.72 0.509403
Target:  5'- -----cGAGUGACGaCGCGCACaugcaGGCGAa -3'
miRNA:   3'- uuuuauCUCGCUGC-GCGCGUG-----CUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9234 0.75 0.353418
Target:  5'- -----cGGGCGACGCGCcaCGCGGCGGc -3'
miRNA:   3'- uuuuauCUCGCUGCGCGc-GUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9236 0.66 0.832432
Target:  5'- ----gAG-GCGcUGaCGCGCGCGGCGGg -3'
miRNA:   3'- uuuuaUCuCGCuGC-GCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9351 0.66 0.850329
Target:  5'- cGGAUcaAGCGACGgGCGCgaGCG-CGAg -3'
miRNA:   3'- uUUUAucUCGCUGCgCGCG--UGCuGCU- -5'
24855 5' -52.7 NC_005284.1 + 9590 0.71 0.531004
Target:  5'- ----cAGGGCGAuCGCGCuGCcGCGGCGGc -3'
miRNA:   3'- uuuuaUCUCGCU-GCGCG-CG-UGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9674 0.66 0.81365
Target:  5'- -----cGAGCGAUGCGCGaaaGCcuuGCGAu -3'
miRNA:   3'- uuuuauCUCGCUGCGCGCg--UGc--UGCU- -5'
24855 5' -52.7 NC_005284.1 + 9822 0.66 0.832432
Target:  5'- ----aGGAaauCGGCGCGCGCAUcACGGg -3'
miRNA:   3'- uuuuaUCUc--GCUGCGCGCGUGcUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9907 0.66 0.832432
Target:  5'- -----uGAGCGACgGCGUGCGcCGuauCGAg -3'
miRNA:   3'- uuuuauCUCGCUG-CGCGCGU-GCu--GCU- -5'
24855 5' -52.7 NC_005284.1 + 10068 0.68 0.709611
Target:  5'- -----uGAGCGA-GCGgaaCGCGCGGCGAc -3'
miRNA:   3'- uuuuauCUCGCUgCGC---GCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 10376 0.67 0.794069
Target:  5'- aGGAAUcuGAGCGGC-UGCGCACGAagcaaGAg -3'
miRNA:   3'- -UUUUAu-CUCGCUGcGCGCGUGCUg----CU- -5'
24855 5' -52.7 NC_005284.1 + 10460 0.67 0.784006
Target:  5'- ----cAGAGCGAuuucgagugcCGCGgGCAUGGCa- -3'
miRNA:   3'- uuuuaUCUCGCU----------GCGCgCGUGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 10640 0.67 0.784006
Target:  5'- -----cGAGCGGCggcgaaGCGCuGCGCGAgGAa -3'
miRNA:   3'- uuuuauCUCGCUG------CGCG-CGUGCUgCU- -5'
24855 5' -52.7 NC_005284.1 + 12983 0.66 0.823146
Target:  5'- gGAAGUGGcGGCGacaacaaccGCGuCGCGCACaucaaGACGAa -3'
miRNA:   3'- -UUUUAUC-UCGC---------UGC-GCGCGUG-----CUGCU- -5'
24855 5' -52.7 NC_005284.1 + 16169 0.7 0.596377
Target:  5'- -uGAUGGGGCucGGCGCgucgaugGCGCugGGCGGc -3'
miRNA:   3'- uuUUAUCUCG--CUGCG-------CGCGugCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.