miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24855 5' -52.7 NC_005284.1 + 18926 0.71 0.531004
Target:  5'- ----cGGAGCuGCGCGCGC-CGAuCGAc -3'
miRNA:   3'- uuuuaUCUCGcUGCGCGCGuGCU-GCU- -5'
24855 5' -52.7 NC_005284.1 + 18962 0.7 0.608743
Target:  5'- --cAUGGccGGCGACGCaacgaucuacGCGgGCGACGAa -3'
miRNA:   3'- uuuUAUC--UCGCUGCG----------CGCgUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 19626 0.7 0.575116
Target:  5'- gGAAAcGGAGUG-CGgGUGUACGACGGc -3'
miRNA:   3'- -UUUUaUCUCGCuGCgCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 19717 0.75 0.34485
Target:  5'- ----cGGAGCGGCGCGCcucauGCuCGACGGa -3'
miRNA:   3'- uuuuaUCUCGCUGCGCG-----CGuGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 21650 0.66 0.850329
Target:  5'- -----cGuGCGAuCGcCGCGCACGAUGc -3'
miRNA:   3'- uuuuauCuCGCU-GC-GCGCGUGCUGCu -5'
24855 5' -52.7 NC_005284.1 + 22021 0.69 0.653825
Target:  5'- ----cAGAgGCG-CGCGaGCGCGACGAu -3'
miRNA:   3'- uuuuaUCU-CGCuGCGCgCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 23078 0.66 0.850329
Target:  5'- -uGGUGGcGGCGACGCugguaGCAUGugGGg -3'
miRNA:   3'- uuUUAUC-UCGCUGCGcg---CGUGCugCU- -5'
24855 5' -52.7 NC_005284.1 + 23345 0.68 0.720577
Target:  5'- -uGAUGGcggaaAGCGGCgGCGUuggcccuacGCACGACGAg -3'
miRNA:   3'- uuUUAUC-----UCGCUG-CGCG---------CGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 23346 0.66 0.850329
Target:  5'- ----gGGGGCccGGCGCGCcGCAgCGGCGc -3'
miRNA:   3'- uuuuaUCUCG--CUGCGCG-CGU-GCUGCu -5'
24855 5' -52.7 NC_005284.1 + 25519 0.67 0.772746
Target:  5'- uGGAAUcGGAGCGGCcgucgucGUGCGCGCGuCGc -3'
miRNA:   3'- -UUUUA-UCUCGCUG-------CGCGCGUGCuGCu -5'
24855 5' -52.7 NC_005284.1 + 26396 0.66 0.802974
Target:  5'- ----cGGcAGCGugGCuGCGCcgcuucgagguggGCGACGAc -3'
miRNA:   3'- uuuuaUC-UCGCugCG-CGCG-------------UGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 29250 1.07 0.002525
Target:  5'- cAAAAUAGAGCGACGCGCGCACGACGAc -3'
miRNA:   3'- -UUUUAUCUCGCUGCGCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 30414 0.66 0.850329
Target:  5'- -----cGAuCGucCGCGUGCGCGACGGc -3'
miRNA:   3'- uuuuauCUcGCu-GCGCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 31431 0.74 0.389174
Target:  5'- -----cGGGCGACGUGCGCcgcuGCGGCGc -3'
miRNA:   3'- uuuuauCUCGCUGCGCGCG----UGCUGCu -5'
24855 5' -52.7 NC_005284.1 + 31620 0.73 0.447049
Target:  5'- -----cGAGCGgaACGCGC-CGCGACGAu -3'
miRNA:   3'- uuuuauCUCGC--UGCGCGcGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 33130 0.68 0.709611
Target:  5'- -----cGAcGCGGCGgcauCGUGCGCGGCGAu -3'
miRNA:   3'- uuuuauCU-CGCUGC----GCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 38848 0.67 0.773778
Target:  5'- ------cGGCGuCGCGCGC-CGACGu -3'
miRNA:   3'- uuuuaucUCGCuGCGCGCGuGCUGCu -5'
24855 5' -52.7 NC_005284.1 + 39296 0.71 0.541929
Target:  5'- cGGGUAacGCGACGcCGCGCuCGGCGAg -3'
miRNA:   3'- uUUUAUcuCGCUGC-GCGCGuGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 44475 0.68 0.731451
Target:  5'- -uGAUcGAGCGGCGCcUGCAUGuCGAu -3'
miRNA:   3'- uuUUAuCUCGCUGCGcGCGUGCuGCU- -5'
24855 5' -52.7 NC_005284.1 + 44955 0.67 0.763396
Target:  5'- --cGUAGGGCGugcccgugauGCGCGCGC-CGAUu- -3'
miRNA:   3'- uuuUAUCUCGC----------UGCGCGCGuGCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.