Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 45142 | 0.72 | 0.467381 |
Target: 5'- -uGAUGGgcaaGGCGugGuCGaCGCACGGCGAc -3' miRNA: 3'- uuUUAUC----UCGCugC-GC-GCGUGCUGCU- -5' |
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24855 | 5' | -52.7 | NC_005284.1 | + | 47746 | 0.72 | 0.477724 |
Target: 5'- -cGGUAcGGCGGCGCGCGUACGuccGCGu -3' miRNA: 3'- uuUUAUcUCGCUGCGCGCGUGC---UGCu -5' |
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24855 | 5' | -52.7 | NC_005284.1 | + | 47807 | 0.75 | 0.336432 |
Target: 5'- -----cGAGCGcgccauguACGCGCGuCACGACGAa -3' miRNA: 3'- uuuuauCUCGC--------UGCGCGC-GUGCUGCU- -5' |
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24855 | 5' | -52.7 | NC_005284.1 | + | 48153 | 0.7 | 0.574001 |
Target: 5'- ----aAGAGCccauuccGGCGCGCGCugG-CGAa -3' miRNA: 3'- uuuuaUCUCG-------CUGCGCGCGugCuGCU- -5' |
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24855 | 5' | -52.7 | NC_005284.1 | + | 49315 | 0.75 | 0.342308 |
Target: 5'- gAGGGUAcGGCGAugguuggcacggcaCGCGUGCGCGACGAc -3' miRNA: 3'- -UUUUAUcUCGCU--------------GCGCGCGUGCUGCU- -5' |
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24855 | 5' | -52.7 | NC_005284.1 | + | 49386 | 0.66 | 0.850329 |
Target: 5'- -----cGAGCuGGCGCGCcGCACGGg-- -3' miRNA: 3'- uuuuauCUCG-CUGCGCG-CGUGCUgcu -5' |
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24855 | 5' | -52.7 | NC_005284.1 | + | 50321 | 0.74 | 0.398476 |
Target: 5'- cGAAGUAuuuGGCGGCGUGC-CGCGGCGAa -3' miRNA: 3'- -UUUUAUc--UCGCUGCGCGcGUGCUGCU- -5' |
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24855 | 5' | -52.7 | NC_005284.1 | + | 51656 | 0.71 | 0.552928 |
Target: 5'- -------uGUGAaucaCGCGCGCGCGACGAu -3' miRNA: 3'- uuuuaucuCGCU----GCGCGCGUGCUGCU- -5' |
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24855 | 5' | -52.7 | NC_005284.1 | + | 54451 | 0.69 | 0.687452 |
Target: 5'- cAAAUGGAagucCGACGCgGUGCGCGGCa- -3' miRNA: 3'- uUUUAUCUc---GCUGCG-CGCGUGCUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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