Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 54451 | 0.69 | 0.687452 |
Target: 5'- cAAAUGGAagucCGACGCgGUGCGCGGCa- -3' miRNA: 3'- uUUUAUCUc---GCUGCG-CGCGUGCUGcu -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 51656 | 0.71 | 0.552928 |
Target: 5'- -------uGUGAaucaCGCGCGCGCGACGAu -3' miRNA: 3'- uuuuaucuCGCU----GCGCGCGUGCUGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 50321 | 0.74 | 0.398476 |
Target: 5'- cGAAGUAuuuGGCGGCGUGC-CGCGGCGAa -3' miRNA: 3'- -UUUUAUc--UCGCUGCGCGcGUGCUGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 49386 | 0.66 | 0.850329 |
Target: 5'- -----cGAGCuGGCGCGCcGCACGGg-- -3' miRNA: 3'- uuuuauCUCG-CUGCGCG-CGUGCUgcu -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 49315 | 0.75 | 0.342308 |
Target: 5'- gAGGGUAcGGCGAugguuggcacggcaCGCGUGCGCGACGAc -3' miRNA: 3'- -UUUUAUcUCGCU--------------GCGCGCGUGCUGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 48153 | 0.7 | 0.574001 |
Target: 5'- ----aAGAGCccauuccGGCGCGCGCugG-CGAa -3' miRNA: 3'- uuuuaUCUCG-------CUGCGCGCGugCuGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 47807 | 0.75 | 0.336432 |
Target: 5'- -----cGAGCGcgccauguACGCGCGuCACGACGAa -3' miRNA: 3'- uuuuauCUCGC--------UGCGCGC-GUGCUGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 47746 | 0.72 | 0.477724 |
Target: 5'- -cGGUAcGGCGGCGCGCGUACGuccGCGu -3' miRNA: 3'- uuUUAUcUCGCUGCGCGCGUGC---UGCu -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 45142 | 0.72 | 0.467381 |
Target: 5'- -uGAUGGgcaaGGCGugGuCGaCGCACGGCGAc -3' miRNA: 3'- uuUUAUC----UCGCugC-GC-GCGUGCUGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 44955 | 0.67 | 0.763396 |
Target: 5'- --cGUAGGGCGugcccgugauGCGCGCGC-CGAUu- -3' miRNA: 3'- uuuUAUCUCGC----------UGCGCGCGuGCUGcu -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 44475 | 0.68 | 0.731451 |
Target: 5'- -uGAUcGAGCGGCGCcUGCAUGuCGAu -3' miRNA: 3'- uuUUAuCUCGCUGCGcGCGUGCuGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 39296 | 0.71 | 0.541929 |
Target: 5'- cGGGUAacGCGACGcCGCGCuCGGCGAg -3' miRNA: 3'- uUUUAUcuCGCUGC-GCGCGuGCUGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 38848 | 0.67 | 0.773778 |
Target: 5'- ------cGGCGuCGCGCGC-CGACGu -3' miRNA: 3'- uuuuaucUCGCuGCGCGCGuGCUGCu -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 33130 | 0.68 | 0.709611 |
Target: 5'- -----cGAcGCGGCGgcauCGUGCGCGGCGAu -3' miRNA: 3'- uuuuauCU-CGCUGC----GCGCGUGCUGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 31620 | 0.73 | 0.447049 |
Target: 5'- -----cGAGCGgaACGCGC-CGCGACGAu -3' miRNA: 3'- uuuuauCUCGC--UGCGCGcGUGCUGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 31431 | 0.74 | 0.389174 |
Target: 5'- -----cGGGCGACGUGCGCcgcuGCGGCGc -3' miRNA: 3'- uuuuauCUCGCUGCGCGCG----UGCUGCu -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 30414 | 0.66 | 0.850329 |
Target: 5'- -----cGAuCGucCGCGUGCGCGACGGc -3' miRNA: 3'- uuuuauCUcGCu-GCGCGCGUGCUGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 29250 | 1.07 | 0.002525 |
Target: 5'- cAAAAUAGAGCGACGCGCGCACGACGAc -3' miRNA: 3'- -UUUUAUCUCGCUGCGCGCGUGCUGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 26396 | 0.66 | 0.802974 |
Target: 5'- ----cGGcAGCGugGCuGCGCcgcuucgagguggGCGACGAc -3' miRNA: 3'- uuuuaUC-UCGCugCG-CGCG-------------UGCUGCU- -5' |
|||||||
24855 | 5' | -52.7 | NC_005284.1 | + | 25519 | 0.67 | 0.772746 |
Target: 5'- uGGAAUcGGAGCGGCcgucgucGUGCGCGCGuCGc -3' miRNA: 3'- -UUUUA-UCUCGCUG-------CGCGCGUGCuGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home