miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24855 5' -52.7 NC_005284.1 + 23346 0.66 0.850329
Target:  5'- ----gGGGGCccGGCGCGCcGCAgCGGCGc -3'
miRNA:   3'- uuuuaUCUCG--CUGCGCG-CGU-GCUGCu -5'
24855 5' -52.7 NC_005284.1 + 23345 0.68 0.720577
Target:  5'- -uGAUGGcggaaAGCGGCgGCGUuggcccuacGCACGACGAg -3'
miRNA:   3'- uuUUAUC-----UCGCUG-CGCG---------CGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 23078 0.66 0.850329
Target:  5'- -uGGUGGcGGCGACGCugguaGCAUGugGGg -3'
miRNA:   3'- uuUUAUC-UCGCUGCGcg---CGUGCugCU- -5'
24855 5' -52.7 NC_005284.1 + 22021 0.69 0.653825
Target:  5'- ----cAGAgGCG-CGCGaGCGCGACGAu -3'
miRNA:   3'- uuuuaUCU-CGCuGCGCgCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 21650 0.66 0.850329
Target:  5'- -----cGuGCGAuCGcCGCGCACGAUGc -3'
miRNA:   3'- uuuuauCuCGCU-GC-GCGCGUGCUGCu -5'
24855 5' -52.7 NC_005284.1 + 19717 0.75 0.34485
Target:  5'- ----cGGAGCGGCGCGCcucauGCuCGACGGa -3'
miRNA:   3'- uuuuaUCUCGCUGCGCG-----CGuGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 19626 0.7 0.575116
Target:  5'- gGAAAcGGAGUG-CGgGUGUACGACGGc -3'
miRNA:   3'- -UUUUaUCUCGCuGCgCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 18962 0.7 0.608743
Target:  5'- --cAUGGccGGCGACGCaacgaucuacGCGgGCGACGAa -3'
miRNA:   3'- uuuUAUC--UCGCUGCG----------CGCgUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 18926 0.71 0.531004
Target:  5'- ----cGGAGCuGCGCGCGC-CGAuCGAc -3'
miRNA:   3'- uuuuaUCUCGcUGCGCGCGuGCU-GCU- -5'
24855 5' -52.7 NC_005284.1 + 16169 0.7 0.596377
Target:  5'- -uGAUGGGGCucGGCGCgucgaugGCGCugGGCGGc -3'
miRNA:   3'- uuUUAUCUCG--CUGCG-------CGCGugCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 12983 0.66 0.823146
Target:  5'- gGAAGUGGcGGCGacaacaaccGCGuCGCGCACaucaaGACGAa -3'
miRNA:   3'- -UUUUAUC-UCGC---------UGC-GCGCGUG-----CUGCU- -5'
24855 5' -52.7 NC_005284.1 + 10640 0.67 0.784006
Target:  5'- -----cGAGCGGCggcgaaGCGCuGCGCGAgGAa -3'
miRNA:   3'- uuuuauCUCGCUG------CGCG-CGUGCUgCU- -5'
24855 5' -52.7 NC_005284.1 + 10460 0.67 0.784006
Target:  5'- ----cAGAGCGAuuucgagugcCGCGgGCAUGGCa- -3'
miRNA:   3'- uuuuaUCUCGCU----------GCGCgCGUGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 10376 0.67 0.794069
Target:  5'- aGGAAUcuGAGCGGC-UGCGCACGAagcaaGAg -3'
miRNA:   3'- -UUUUAu-CUCGCUGcGCGCGUGCUg----CU- -5'
24855 5' -52.7 NC_005284.1 + 10068 0.68 0.709611
Target:  5'- -----uGAGCGA-GCGgaaCGCGCGGCGAc -3'
miRNA:   3'- uuuuauCUCGCUgCGC---GCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9907 0.66 0.832432
Target:  5'- -----uGAGCGACgGCGUGCGcCGuauCGAg -3'
miRNA:   3'- uuuuauCUCGCUG-CGCGCGU-GCu--GCU- -5'
24855 5' -52.7 NC_005284.1 + 9822 0.66 0.832432
Target:  5'- ----aGGAaauCGGCGCGCGCAUcACGGg -3'
miRNA:   3'- uuuuaUCUc--GCUGCGCGCGUGcUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9674 0.66 0.81365
Target:  5'- -----cGAGCGAUGCGCGaaaGCcuuGCGAu -3'
miRNA:   3'- uuuuauCUCGCUGCGCGCg--UGc--UGCU- -5'
24855 5' -52.7 NC_005284.1 + 9590 0.71 0.531004
Target:  5'- ----cAGGGCGAuCGCGCuGCcGCGGCGGc -3'
miRNA:   3'- uuuuaUCUCGCU-GCGCG-CG-UGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 9351 0.66 0.850329
Target:  5'- cGGAUcaAGCGACGgGCGCgaGCG-CGAg -3'
miRNA:   3'- uUUUAucUCGCUGCgCGCG--UGCuGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.