miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24855 5' -52.7 NC_005284.1 + 23346 0.66 0.850329
Target:  5'- ----gGGGGCccGGCGCGCcGCAgCGGCGc -3'
miRNA:   3'- uuuuaUCUCG--CUGCGCG-CGU-GCUGCu -5'
24855 5' -52.7 NC_005284.1 + 9234 0.75 0.353418
Target:  5'- -----cGGGCGACGCGCcaCGCGGCGGc -3'
miRNA:   3'- uuuuauCUCGCUGCGCGc-GUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 22021 0.69 0.653825
Target:  5'- ----cAGAgGCG-CGCGaGCGCGACGAu -3'
miRNA:   3'- uuuuaUCU-CGCuGCGCgCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 33130 0.68 0.709611
Target:  5'- -----cGAcGCGGCGgcauCGUGCGCGGCGAu -3'
miRNA:   3'- uuuuauCU-CGCUGC----GCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 44955 0.67 0.763396
Target:  5'- --cGUAGGGCGugcccgugauGCGCGCGC-CGAUu- -3'
miRNA:   3'- uuuUAUCUCGC----------UGCGCGCGuGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 38848 0.67 0.773778
Target:  5'- ------cGGCGuCGCGCGC-CGACGu -3'
miRNA:   3'- uuuuaucUCGCuGCGCGCGuGCUGCu -5'
24855 5' -52.7 NC_005284.1 + 29250 1.07 0.002525
Target:  5'- cAAAAUAGAGCGACGCGCGCACGACGAc -3'
miRNA:   3'- -UUUUAUCUCGCUGCGCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 31620 0.73 0.447049
Target:  5'- -----cGAGCGgaACGCGC-CGCGACGAu -3'
miRNA:   3'- uuuuauCUCGC--UGCGCGcGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 44475 0.68 0.731451
Target:  5'- -uGAUcGAGCGGCGCcUGCAUGuCGAu -3'
miRNA:   3'- uuUUAuCUCGCUGCGcGCGUGCuGCU- -5'
24855 5' -52.7 NC_005284.1 + 10460 0.67 0.784006
Target:  5'- ----cAGAGCGAuuucgagugcCGCGgGCAUGGCa- -3'
miRNA:   3'- uuuuaUCUCGCU----------GCGCgCGUGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 9907 0.66 0.832432
Target:  5'- -----uGAGCGACgGCGUGCGcCGuauCGAg -3'
miRNA:   3'- uuuuauCUCGCUG-CGCGCGU-GCu--GCU- -5'
24855 5' -52.7 NC_005284.1 + 3838 0.66 0.81365
Target:  5'- uGAAGUAGAGaUGA-GCGCuCACGACa- -3'
miRNA:   3'- -UUUUAUCUC-GCUgCGCGcGUGCUGcu -5'
24855 5' -52.7 NC_005284.1 + 39296 0.71 0.541929
Target:  5'- cGGGUAacGCGACGcCGCGCuCGGCGAg -3'
miRNA:   3'- uUUUAUcuCGCUGC-GCGCGuGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 47807 0.75 0.336432
Target:  5'- -----cGAGCGcgccauguACGCGCGuCACGACGAa -3'
miRNA:   3'- uuuuauCUCGC--------UGCGCGC-GUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 16169 0.7 0.596377
Target:  5'- -uGAUGGGGCucGGCGCgucgaugGCGCugGGCGGc -3'
miRNA:   3'- uuUUAUCUCG--CUGCG-------CGCGugCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 7865 0.7 0.586288
Target:  5'- cGGAAUGGAGUGGCgaaaagaucgcaGUGCGCGagcCGACGGu -3'
miRNA:   3'- -UUUUAUCUCGCUG------------CGCGCGU---GCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 19626 0.7 0.575116
Target:  5'- gGAAAcGGAGUG-CGgGUGUACGACGGc -3'
miRNA:   3'- -UUUUaUCUCGCuGCgCGCGUGCUGCU- -5'
24855 5' -52.7 NC_005284.1 + 48153 0.7 0.574001
Target:  5'- ----aAGAGCccauuccGGCGCGCGCugG-CGAa -3'
miRNA:   3'- uuuuaUCUCG-------CUGCGCGCGugCuGCU- -5'
24855 5' -52.7 NC_005284.1 + 31431 0.74 0.389174
Target:  5'- -----cGGGCGACGUGCGCcgcuGCGGCGc -3'
miRNA:   3'- uuuuauCUCGCUGCGCGCG----UGCUGCu -5'
24855 5' -52.7 NC_005284.1 + 47746 0.72 0.477724
Target:  5'- -cGGUAcGGCGGCGCGCGUACGuccGCGu -3'
miRNA:   3'- uuUUAUcUCGCUGCGCGCGUGC---UGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.