miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24857 5' -56.8 NC_005284.1 + 29720 0.66 0.655699
Target:  5'- uCGgCCGGCGuCAUCaGgCGu--UCGGUCa -3'
miRNA:   3'- -GCgGGCCGC-GUAG-CgGCuuuAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 27908 0.66 0.633907
Target:  5'- aGCCCGGCGa--CGaaaaGcGAUCGGUCg -3'
miRNA:   3'- gCGGGCCGCguaGCgg--CuUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 44939 0.66 0.631726
Target:  5'- gCGCCuCGGUGUAUCGCCcgccgugcuUCGGa- -3'
miRNA:   3'- -GCGG-GCCGCGUAGCGGcuuu-----AGUCag -5'
24857 5' -56.8 NC_005284.1 + 10578 0.66 0.623004
Target:  5'- -cCUCGGCGUcgacgagaaAUCGCgCGAGAUCGGg- -3'
miRNA:   3'- gcGGGCCGCG---------UAGCG-GCUUUAGUCag -5'
24857 5' -56.8 NC_005284.1 + 37820 0.66 0.623004
Target:  5'- gCGCCCGGaacgccggaaugUGCGUgGCUauGggGUgAGUCg -3'
miRNA:   3'- -GCGGGCC------------GCGUAgCGG--CuuUAgUCAG- -5'
24857 5' -56.8 NC_005284.1 + 9448 0.66 0.612109
Target:  5'- gGCCgGGCGgAUUGCCGuguacuuugggcAAuccgCAGUCg -3'
miRNA:   3'- gCGGgCCGCgUAGCGGC------------UUua--GUCAG- -5'
24857 5' -56.8 NC_005284.1 + 35964 0.66 0.601231
Target:  5'- aCGCCCGGCcccuUCGCCGGGAaccaCGGcCc -3'
miRNA:   3'- -GCGGGCCGcgu-AGCGGCUUUa---GUCaG- -5'
24857 5' -56.8 NC_005284.1 + 16192 0.66 0.601231
Target:  5'- gCGCUgGGCgGCAUCGUgcaGAugcUCAGUCc -3'
miRNA:   3'- -GCGGgCCG-CGUAGCGg--CUuu-AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 33391 0.66 0.601231
Target:  5'- aGaCCCGGCaGCAcUCGaCCGccagCAGUCa -3'
miRNA:   3'- gC-GGGCCG-CGU-AGC-GGCuuuaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 45560 0.67 0.579561
Target:  5'- cCGCgUGGCGCGUCGCCcgcg-CAcUCg -3'
miRNA:   3'- -GCGgGCCGCGUAGCGGcuuuaGUcAG- -5'
24857 5' -56.8 NC_005284.1 + 7905 0.67 0.568785
Target:  5'- aCGCCgGGUucaAUCGCCGGcgcaagguccGGUCGGUUg -3'
miRNA:   3'- -GCGGgCCGcg-UAGCGGCU----------UUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 48806 0.67 0.568785
Target:  5'- cCGCCCGaauCGCAUCGUucgCGAcGAUCGGaUCg -3'
miRNA:   3'- -GCGGGCc--GCGUAGCG---GCU-UUAGUC-AG- -5'
24857 5' -56.8 NC_005284.1 + 35818 0.67 0.558061
Target:  5'- uCGCCCGcGUagaucguuGCGUCGCCGGccAUCGG-Cg -3'
miRNA:   3'- -GCGGGC-CG--------CGUAGCGGCUu-UAGUCaG- -5'
24857 5' -56.8 NC_005284.1 + 40219 0.67 0.558061
Target:  5'- uCGCCaaGCGCAacgcacagCGCCGAAAUCGuUCc -3'
miRNA:   3'- -GCGGgcCGCGUa-------GCGGCUUUAGUcAG- -5'
24857 5' -56.8 NC_005284.1 + 9519 0.67 0.558061
Target:  5'- gCGCCCGGCGagcgcUCGUCGAggagacGAUCAa-- -3'
miRNA:   3'- -GCGGGCCGCgu---AGCGGCU------UUAGUcag -5'
24857 5' -56.8 NC_005284.1 + 45355 0.67 0.556992
Target:  5'- cCGCCCGGcCGCGagcgacaCGCCGAGuuUCAcgaugccGUCg -3'
miRNA:   3'- -GCGGGCC-GCGUa------GCGGCUUu-AGU-------CAG- -5'
24857 5' -56.8 NC_005284.1 + 38272 0.67 0.547395
Target:  5'- aGCCCcacgauGgGCccCGCCGAGAUCAcGUCg -3'
miRNA:   3'- gCGGGc-----CgCGuaGCGGCUUUAGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 21515 0.67 0.536794
Target:  5'- gCGgCCGGCGCuugCGUCGAgcaccuGAUCGG-Cg -3'
miRNA:   3'- -GCgGGCCGCGua-GCGGCU------UUAGUCaG- -5'
24857 5' -56.8 NC_005284.1 + 10946 0.67 0.536794
Target:  5'- uGgCCGGCcuCGUCGCCGGAcgagcggacgcAUCAaGUCg -3'
miRNA:   3'- gCgGGCCGc-GUAGCGGCUU-----------UAGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 44661 0.68 0.526265
Target:  5'- aGCgCCGucuGCGcCGUCGCCGcgcuuUCGGUCg -3'
miRNA:   3'- gCG-GGC---CGC-GUAGCGGCuuu--AGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.