miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24857 5' -56.8 NC_005284.1 + 27867 1.09 0.000748
Target:  5'- cCGCCCGGCGCAUCGCCGAAAUCAGUCc -3'
miRNA:   3'- -GCGGGCCGCGUAGCGGCUUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 49881 0.78 0.128835
Target:  5'- aGUgCCGGCGCAUCGUCGAGAUCuGa- -3'
miRNA:   3'- gCG-GGCCGCGUAGCGGCUUUAGuCag -5'
24857 5' -56.8 NC_005284.1 + 11766 0.75 0.188492
Target:  5'- uCGCCCGaGUaCAUCGCCGAGAUCGa-- -3'
miRNA:   3'- -GCGGGC-CGcGUAGCGGCUUUAGUcag -5'
24857 5' -56.8 NC_005284.1 + 54598 0.75 0.193575
Target:  5'- uGCCCcGCGCcUCGCCGAcAAUcCAGUCc -3'
miRNA:   3'- gCGGGcCGCGuAGCGGCU-UUA-GUCAG- -5'
24857 5' -56.8 NC_005284.1 + 13314 0.73 0.244912
Target:  5'- --aCUGGCaCGUCGCCGAGcgCGGUCg -3'
miRNA:   3'- gcgGGCCGcGUAGCGGCUUuaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 17994 0.73 0.271146
Target:  5'- uGCCCaGGCGCG-CGCagucAAGUCGGUCg -3'
miRNA:   3'- gCGGG-CCGCGUaGCGgc--UUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 34805 0.72 0.306304
Target:  5'- uCGUCauaGGCGCgGUCGCCGAucauaucGAUCAcGUCg -3'
miRNA:   3'- -GCGGg--CCGCG-UAGCGGCU-------UUAGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 47425 0.72 0.307057
Target:  5'- aCGCCagauCGGC-CG-CGUCGAGAUCGGUCg -3'
miRNA:   3'- -GCGG----GCCGcGUaGCGGCUUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 47097 0.72 0.314662
Target:  5'- cCGCUCacGCGCAcgcuguacgUCGCCGAAAUCAGcCc -3'
miRNA:   3'- -GCGGGc-CGCGU---------AGCGGCUUUAGUCaG- -5'
24857 5' -56.8 NC_005284.1 + 43194 0.71 0.330296
Target:  5'- aCGCUCGGcCGCguaGUCGCCGAGcUCcgcGUCg -3'
miRNA:   3'- -GCGGGCC-GCG---UAGCGGCUUuAGu--CAG- -5'
24857 5' -56.8 NC_005284.1 + 38844 0.71 0.338325
Target:  5'- aGgCCGGCGUcgcgCGCCGAcGUCAGg- -3'
miRNA:   3'- gCgGGCCGCGua--GCGGCUuUAGUCag -5'
24857 5' -56.8 NC_005284.1 + 55 0.71 0.346495
Target:  5'- -aCCCGGCGCAUCcGCCGGg--CGGg- -3'
miRNA:   3'- gcGGGCCGCGUAG-CGGCUuuaGUCag -5'
24857 5' -56.8 NC_005284.1 + 6632 0.71 0.352297
Target:  5'- uCGCCa-GCGCG-CGCCGGAaugggcucuuugauGUCGGUCg -3'
miRNA:   3'- -GCGGgcCGCGUaGCGGCUU--------------UAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 32725 0.71 0.353967
Target:  5'- aGUCCGGcCGCAuagcccuuguugcUUGCCGcGAUCAGUUc -3'
miRNA:   3'- gCGGGCC-GCGU-------------AGCGGCuUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 44160 0.71 0.354805
Target:  5'- uCGCCgCcGCuCGUCGCCGAcacgaagcggucGAUCAGUCg -3'
miRNA:   3'- -GCGG-GcCGcGUAGCGGCU------------UUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 54736 0.7 0.371843
Target:  5'- cCGCCCGGCGgAUgCGCCG-GGUgGGg- -3'
miRNA:   3'- -GCGGGCCGCgUA-GCGGCuUUAgUCag -5'
24857 5' -56.8 NC_005284.1 + 14580 0.7 0.386757
Target:  5'- gGCCgCGGCGagggagccagaggaCGCCGGAGUUGGUCg -3'
miRNA:   3'- gCGG-GCCGCgua-----------GCGGCUUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 16997 0.7 0.38943
Target:  5'- gCGCacaCGGCGacgAUCGCCGAcgcGAUCAacGUCg -3'
miRNA:   3'- -GCGg--GCCGCg--UAGCGGCU---UUAGU--CAG- -5'
24857 5' -56.8 NC_005284.1 + 8337 0.7 0.398425
Target:  5'- aCGCUCGGCgGCAuUCGgCGAcggcGAUCGGUUc -3'
miRNA:   3'- -GCGGGCCG-CGU-AGCgGCU----UUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 41362 0.7 0.407552
Target:  5'- gGCCU-GCGgAUCGCCGAGAcacgcccgCGGUCa -3'
miRNA:   3'- gCGGGcCGCgUAGCGGCUUUa-------GUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.