miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24857 5' -56.8 NC_005284.1 + 29548 0.68 0.526265
Target:  5'- --aUUGGCGuCAUCGUCGGAG-CAGUCa -3'
miRNA:   3'- gcgGGCCGC-GUAGCGGCUUUaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 50961 0.68 0.526265
Target:  5'- gCGUUCGGCGCuUCGUCGAuccaCAGaUCg -3'
miRNA:   3'- -GCGGGCCGCGuAGCGGCUuua-GUC-AG- -5'
24857 5' -56.8 NC_005284.1 + 21523 0.68 0.515814
Target:  5'- aCGCgCGGCaGCAUCGCCcacugcGGAggCGGUg -3'
miRNA:   3'- -GCGgGCCG-CGUAGCGG------CUUuaGUCAg -5'
24857 5' -56.8 NC_005284.1 + 26213 0.68 0.495174
Target:  5'- uCGUCCgugcgGGCGUAUUGCCuGAGUCgGGUCu -3'
miRNA:   3'- -GCGGG-----CCGCGUAGCGGcUUUAG-UCAG- -5'
24857 5' -56.8 NC_005284.1 + 19020 0.68 0.495174
Target:  5'- uCGCUgcaggCGGCG-AUCGCCGAGGgcgauauggCGGUCg -3'
miRNA:   3'- -GCGG-----GCCGCgUAGCGGCUUUa--------GUCAG- -5'
24857 5' -56.8 NC_005284.1 + 38610 0.68 0.495174
Target:  5'- cCGCCCaGCGCcaucgacgCGCCGAGccccAUCAG-Cg -3'
miRNA:   3'- -GCGGGcCGCGua------GCGGCUU----UAGUCaG- -5'
24857 5' -56.8 NC_005284.1 + 44771 0.68 0.484995
Target:  5'- aCGCUCGGCuugcGCAagGCCGcgGUCcGUCu -3'
miRNA:   3'- -GCGGGCCG----CGUagCGGCuuUAGuCAG- -5'
24857 5' -56.8 NC_005284.1 + 48139 0.68 0.484995
Target:  5'- -aCCCGGCGCGUCuuucuGCCGAAGUg---- -3'
miRNA:   3'- gcGGGCCGCGUAG-----CGGCUUUAgucag -5'
24857 5' -56.8 NC_005284.1 + 23349 0.68 0.484995
Target:  5'- gGCCCGGCGCGcCGCagcGGcgCAcGUCg -3'
miRNA:   3'- gCGGGCCGCGUaGCGgc-UUuaGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 9789 0.68 0.484995
Target:  5'- uCGCaaCGGCGCgcgccaacGUCGCCGGcAGUCAGg- -3'
miRNA:   3'- -GCGg-GCCGCG--------UAGCGGCU-UUAGUCag -5'
24857 5' -56.8 NC_005284.1 + 21828 0.69 0.474917
Target:  5'- uGCCCGGCGCuuccagcgcCGCCGgcGUgGG-Cg -3'
miRNA:   3'- gCGGGCCGCGua-------GCGGCuuUAgUCaG- -5'
24857 5' -56.8 NC_005284.1 + 23884 0.69 0.464944
Target:  5'- cCGCCCGaUGCAUC-CCGAcugggcUCGGUCg -3'
miRNA:   3'- -GCGGGCcGCGUAGcGGCUuu----AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 112 0.69 0.455082
Target:  5'- cCGCUCGcGCGCcgucuUCGCCGcguGA-CAGUCa -3'
miRNA:   3'- -GCGGGC-CGCGu----AGCGGCu--UUaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 48252 0.69 0.435703
Target:  5'- aCGCUgaCGGCGCGUUGCCGug--CGGg- -3'
miRNA:   3'- -GCGG--GCCGCGUAGCGGCuuuaGUCag -5'
24857 5' -56.8 NC_005284.1 + 5426 0.69 0.426194
Target:  5'- gCGCUCGGCGaagcugCGaCCGAuaguUCGGUCg -3'
miRNA:   3'- -GCGGGCCGCgua---GC-GGCUuu--AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 12407 0.7 0.416809
Target:  5'- uCGCCgGcGCGCAaCGgCGGGAucUCGGUCa -3'
miRNA:   3'- -GCGGgC-CGCGUaGCgGCUUU--AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 41362 0.7 0.407552
Target:  5'- gGCCU-GCGgAUCGCCGAGAcacgcccgCGGUCa -3'
miRNA:   3'- gCGGGcCGCgUAGCGGCUUUa-------GUCAG- -5'
24857 5' -56.8 NC_005284.1 + 8337 0.7 0.398425
Target:  5'- aCGCUCGGCgGCAuUCGgCGAcggcGAUCGGUUc -3'
miRNA:   3'- -GCGGGCCG-CGU-AGCgGCU----UUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 16997 0.7 0.38943
Target:  5'- gCGCacaCGGCGacgAUCGCCGAcgcGAUCAacGUCg -3'
miRNA:   3'- -GCGg--GCCGCg--UAGCGGCU---UUAGU--CAG- -5'
24857 5' -56.8 NC_005284.1 + 14580 0.7 0.386757
Target:  5'- gGCCgCGGCGagggagccagaggaCGCCGGAGUUGGUCg -3'
miRNA:   3'- gCGG-GCCGCgua-----------GCGGCUUUAGUCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.