miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24857 5' -56.8 NC_005284.1 + 55 0.71 0.346495
Target:  5'- -aCCCGGCGCAUCcGCCGGg--CGGg- -3'
miRNA:   3'- gcGGGCCGCGUAG-CGGCUuuaGUCag -5'
24857 5' -56.8 NC_005284.1 + 112 0.69 0.455082
Target:  5'- cCGCUCGcGCGCcgucuUCGCCGcguGA-CAGUCa -3'
miRNA:   3'- -GCGGGC-CGCGu----AGCGGCu--UUaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 5426 0.69 0.426194
Target:  5'- gCGCUCGGCGaagcugCGaCCGAuaguUCGGUCg -3'
miRNA:   3'- -GCGGGCCGCgua---GC-GGCUuu--AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 6632 0.71 0.352297
Target:  5'- uCGCCa-GCGCG-CGCCGGAaugggcucuuugauGUCGGUCg -3'
miRNA:   3'- -GCGGgcCGCGUaGCGGCUU--------------UAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 7905 0.67 0.568785
Target:  5'- aCGCCgGGUucaAUCGCCGGcgcaagguccGGUCGGUUg -3'
miRNA:   3'- -GCGGgCCGcg-UAGCGGCU----------UUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 8337 0.7 0.398425
Target:  5'- aCGCUCGGCgGCAuUCGgCGAcggcGAUCGGUUc -3'
miRNA:   3'- -GCGGGCCG-CGU-AGCgGCU----UUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 9448 0.66 0.612109
Target:  5'- gGCCgGGCGgAUUGCCGuguacuuugggcAAuccgCAGUCg -3'
miRNA:   3'- gCGGgCCGCgUAGCGGC------------UUua--GUCAG- -5'
24857 5' -56.8 NC_005284.1 + 9519 0.67 0.558061
Target:  5'- gCGCCCGGCGagcgcUCGUCGAggagacGAUCAa-- -3'
miRNA:   3'- -GCGGGCCGCgu---AGCGGCU------UUAGUcag -5'
24857 5' -56.8 NC_005284.1 + 9789 0.68 0.484995
Target:  5'- uCGCaaCGGCGCgcgccaacGUCGCCGGcAGUCAGg- -3'
miRNA:   3'- -GCGg-GCCGCG--------UAGCGGCU-UUAGUCag -5'
24857 5' -56.8 NC_005284.1 + 10578 0.66 0.623004
Target:  5'- -cCUCGGCGUcgacgagaaAUCGCgCGAGAUCGGg- -3'
miRNA:   3'- gcGGGCCGCG---------UAGCG-GCUUUAGUCag -5'
24857 5' -56.8 NC_005284.1 + 10946 0.67 0.536794
Target:  5'- uGgCCGGCcuCGUCGCCGGAcgagcggacgcAUCAaGUCg -3'
miRNA:   3'- gCgGGCCGc-GUAGCGGCUU-----------UAGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 11766 0.75 0.188492
Target:  5'- uCGCCCGaGUaCAUCGCCGAGAUCGa-- -3'
miRNA:   3'- -GCGGGC-CGcGUAGCGGCUUUAGUcag -5'
24857 5' -56.8 NC_005284.1 + 12407 0.7 0.416809
Target:  5'- uCGCCgGcGCGCAaCGgCGGGAucUCGGUCa -3'
miRNA:   3'- -GCGGgC-CGCGUaGCgGCUUU--AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 13314 0.73 0.244912
Target:  5'- --aCUGGCaCGUCGCCGAGcgCGGUCg -3'
miRNA:   3'- gcgGGCCGcGUAGCGGCUUuaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 14580 0.7 0.386757
Target:  5'- gGCCgCGGCGagggagccagaggaCGCCGGAGUUGGUCg -3'
miRNA:   3'- gCGG-GCCGCgua-----------GCGGCUUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 16192 0.66 0.601231
Target:  5'- gCGCUgGGCgGCAUCGUgcaGAugcUCAGUCc -3'
miRNA:   3'- -GCGGgCCG-CGUAGCGg--CUuu-AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 16997 0.7 0.38943
Target:  5'- gCGCacaCGGCGacgAUCGCCGAcgcGAUCAacGUCg -3'
miRNA:   3'- -GCGg--GCCGCg--UAGCGGCU---UUAGU--CAG- -5'
24857 5' -56.8 NC_005284.1 + 17994 0.73 0.271146
Target:  5'- uGCCCaGGCGCG-CGCagucAAGUCGGUCg -3'
miRNA:   3'- gCGGG-CCGCGUaGCGgc--UUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 19020 0.68 0.495174
Target:  5'- uCGCUgcaggCGGCG-AUCGCCGAGGgcgauauggCGGUCg -3'
miRNA:   3'- -GCGG-----GCCGCgUAGCGGCUUUa--------GUCAG- -5'
24857 5' -56.8 NC_005284.1 + 21515 0.67 0.536794
Target:  5'- gCGgCCGGCGCuugCGUCGAgcaccuGAUCGG-Cg -3'
miRNA:   3'- -GCgGGCCGCGua-GCGGCU------UUAGUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.