miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24857 5' -56.8 NC_005284.1 + 21523 0.68 0.515814
Target:  5'- aCGCgCGGCaGCAUCGCCcacugcGGAggCGGUg -3'
miRNA:   3'- -GCGgGCCG-CGUAGCGG------CUUuaGUCAg -5'
24857 5' -56.8 NC_005284.1 + 21828 0.69 0.474917
Target:  5'- uGCCCGGCGCuuccagcgcCGCCGgcGUgGG-Cg -3'
miRNA:   3'- gCGGGCCGCGua-------GCGGCuuUAgUCaG- -5'
24857 5' -56.8 NC_005284.1 + 23349 0.68 0.484995
Target:  5'- gGCCCGGCGCGcCGCagcGGcgCAcGUCg -3'
miRNA:   3'- gCGGGCCGCGUaGCGgc-UUuaGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 23884 0.69 0.464944
Target:  5'- cCGCCCGaUGCAUC-CCGAcugggcUCGGUCg -3'
miRNA:   3'- -GCGGGCcGCGUAGcGGCUuu----AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 26213 0.68 0.495174
Target:  5'- uCGUCCgugcgGGCGUAUUGCCuGAGUCgGGUCu -3'
miRNA:   3'- -GCGGG-----CCGCGUAGCGGcUUUAG-UCAG- -5'
24857 5' -56.8 NC_005284.1 + 27867 1.09 0.000748
Target:  5'- cCGCCCGGCGCAUCGCCGAAAUCAGUCc -3'
miRNA:   3'- -GCGGGCCGCGUAGCGGCUUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 27908 0.66 0.633907
Target:  5'- aGCCCGGCGa--CGaaaaGcGAUCGGUCg -3'
miRNA:   3'- gCGGGCCGCguaGCgg--CuUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 29548 0.68 0.526265
Target:  5'- --aUUGGCGuCAUCGUCGGAG-CAGUCa -3'
miRNA:   3'- gcgGGCCGC-GUAGCGGCUUUaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 29720 0.66 0.655699
Target:  5'- uCGgCCGGCGuCAUCaGgCGu--UCGGUCa -3'
miRNA:   3'- -GCgGGCCGC-GUAG-CgGCuuuAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 32725 0.71 0.353967
Target:  5'- aGUCCGGcCGCAuagcccuuguugcUUGCCGcGAUCAGUUc -3'
miRNA:   3'- gCGGGCC-GCGU-------------AGCGGCuUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 33391 0.66 0.601231
Target:  5'- aGaCCCGGCaGCAcUCGaCCGccagCAGUCa -3'
miRNA:   3'- gC-GGGCCG-CGU-AGC-GGCuuuaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 34805 0.72 0.306304
Target:  5'- uCGUCauaGGCGCgGUCGCCGAucauaucGAUCAcGUCg -3'
miRNA:   3'- -GCGGg--CCGCG-UAGCGGCU-------UUAGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 35818 0.67 0.558061
Target:  5'- uCGCCCGcGUagaucguuGCGUCGCCGGccAUCGG-Cg -3'
miRNA:   3'- -GCGGGC-CG--------CGUAGCGGCUu-UAGUCaG- -5'
24857 5' -56.8 NC_005284.1 + 35964 0.66 0.601231
Target:  5'- aCGCCCGGCcccuUCGCCGGGAaccaCGGcCc -3'
miRNA:   3'- -GCGGGCCGcgu-AGCGGCUUUa---GUCaG- -5'
24857 5' -56.8 NC_005284.1 + 37820 0.66 0.623004
Target:  5'- gCGCCCGGaacgccggaaugUGCGUgGCUauGggGUgAGUCg -3'
miRNA:   3'- -GCGGGCC------------GCGUAgCGG--CuuUAgUCAG- -5'
24857 5' -56.8 NC_005284.1 + 38272 0.67 0.547395
Target:  5'- aGCCCcacgauGgGCccCGCCGAGAUCAcGUCg -3'
miRNA:   3'- gCGGGc-----CgCGuaGCGGCUUUAGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 38610 0.68 0.495174
Target:  5'- cCGCCCaGCGCcaucgacgCGCCGAGccccAUCAG-Cg -3'
miRNA:   3'- -GCGGGcCGCGua------GCGGCUU----UAGUCaG- -5'
24857 5' -56.8 NC_005284.1 + 38844 0.71 0.338325
Target:  5'- aGgCCGGCGUcgcgCGCCGAcGUCAGg- -3'
miRNA:   3'- gCgGGCCGCGua--GCGGCUuUAGUCag -5'
24857 5' -56.8 NC_005284.1 + 40219 0.67 0.558061
Target:  5'- uCGCCaaGCGCAacgcacagCGCCGAAAUCGuUCc -3'
miRNA:   3'- -GCGGgcCGCGUa-------GCGGCUUUAGUcAG- -5'
24857 5' -56.8 NC_005284.1 + 41362 0.7 0.407552
Target:  5'- gGCCU-GCGgAUCGCCGAGAcacgcccgCGGUCa -3'
miRNA:   3'- gCGGGcCGCgUAGCGGCUUUa-------GUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.