miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24857 5' -56.8 NC_005284.1 + 37820 0.66 0.623004
Target:  5'- gCGCCCGGaacgccggaaugUGCGUgGCUauGggGUgAGUCg -3'
miRNA:   3'- -GCGGGCC------------GCGUAgCGG--CuuUAgUCAG- -5'
24857 5' -56.8 NC_005284.1 + 19020 0.68 0.495174
Target:  5'- uCGCUgcaggCGGCG-AUCGCCGAGGgcgauauggCGGUCg -3'
miRNA:   3'- -GCGG-----GCCGCgUAGCGGCUUUa--------GUCAG- -5'
24857 5' -56.8 NC_005284.1 + 26213 0.68 0.495174
Target:  5'- uCGUCCgugcgGGCGUAUUGCCuGAGUCgGGUCu -3'
miRNA:   3'- -GCGGG-----CCGCGUAGCGGcUUUAG-UCAG- -5'
24857 5' -56.8 NC_005284.1 + 10946 0.67 0.536794
Target:  5'- uGgCCGGCcuCGUCGCCGGAcgagcggacgcAUCAaGUCg -3'
miRNA:   3'- gCgGGCCGc-GUAGCGGCUU-----------UAGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 21515 0.67 0.536794
Target:  5'- gCGgCCGGCGCuugCGUCGAgcaccuGAUCGG-Cg -3'
miRNA:   3'- -GCgGGCCGCGua-GCGGCU------UUAGUCaG- -5'
24857 5' -56.8 NC_005284.1 + 9519 0.67 0.558061
Target:  5'- gCGCCCGGCGagcgcUCGUCGAggagacGAUCAa-- -3'
miRNA:   3'- -GCGGGCCGCgu---AGCGGCU------UUAGUcag -5'
24857 5' -56.8 NC_005284.1 + 45560 0.67 0.579561
Target:  5'- cCGCgUGGCGCGUCGCCcgcg-CAcUCg -3'
miRNA:   3'- -GCGgGCCGCGUAGCGGcuuuaGUcAG- -5'
24857 5' -56.8 NC_005284.1 + 16192 0.66 0.601231
Target:  5'- gCGCUgGGCgGCAUCGUgcaGAugcUCAGUCc -3'
miRNA:   3'- -GCGGgCCG-CGUAGCGg--CUuu-AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 9448 0.66 0.612109
Target:  5'- gGCCgGGCGgAUUGCCGuguacuuugggcAAuccgCAGUCg -3'
miRNA:   3'- gCGGgCCGCgUAGCGGC------------UUua--GUCAG- -5'
24857 5' -56.8 NC_005284.1 + 9789 0.68 0.484995
Target:  5'- uCGCaaCGGCGCgcgccaacGUCGCCGGcAGUCAGg- -3'
miRNA:   3'- -GCGg-GCCGCG--------UAGCGGCU-UUAGUCag -5'
24857 5' -56.8 NC_005284.1 + 21828 0.69 0.474917
Target:  5'- uGCCCGGCGCuuccagcgcCGCCGgcGUgGG-Cg -3'
miRNA:   3'- gCGGGCCGCGua-------GCGGCuuUAgUCaG- -5'
24857 5' -56.8 NC_005284.1 + 48252 0.69 0.435703
Target:  5'- aCGCUgaCGGCGCGUUGCCGug--CGGg- -3'
miRNA:   3'- -GCGG--GCCGCGUAGCGGCuuuaGUCag -5'
24857 5' -56.8 NC_005284.1 + 13314 0.73 0.244912
Target:  5'- --aCUGGCaCGUCGCCGAGcgCGGUCg -3'
miRNA:   3'- gcgGGCCGcGUAGCGGCUUuaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 17994 0.73 0.271146
Target:  5'- uGCCCaGGCGCG-CGCagucAAGUCGGUCg -3'
miRNA:   3'- gCGGG-CCGCGUaGCGgc--UUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 34805 0.72 0.306304
Target:  5'- uCGUCauaGGCGCgGUCGCCGAucauaucGAUCAcGUCg -3'
miRNA:   3'- -GCGGg--CCGCG-UAGCGGCU-------UUAGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 32725 0.71 0.353967
Target:  5'- aGUCCGGcCGCAuagcccuuguugcUUGCCGcGAUCAGUUc -3'
miRNA:   3'- gCGGGCC-GCGU-------------AGCGGCuUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 54736 0.7 0.371843
Target:  5'- cCGCCCGGCGgAUgCGCCG-GGUgGGg- -3'
miRNA:   3'- -GCGGGCCGCgUA-GCGGCuUUAgUCag -5'
24857 5' -56.8 NC_005284.1 + 16997 0.7 0.38943
Target:  5'- gCGCacaCGGCGacgAUCGCCGAcgcGAUCAacGUCg -3'
miRNA:   3'- -GCGg--GCCGCg--UAGCGGCU---UUAGU--CAG- -5'
24857 5' -56.8 NC_005284.1 + 41362 0.7 0.407552
Target:  5'- gGCCU-GCGgAUCGCCGAGAcacgcccgCGGUCa -3'
miRNA:   3'- gCGGGcCGCgUAGCGGCUUUa-------GUCAG- -5'
24857 5' -56.8 NC_005284.1 + 12407 0.7 0.416809
Target:  5'- uCGCCgGcGCGCAaCGgCGGGAucUCGGUCa -3'
miRNA:   3'- -GCGGgC-CGCGUaGCgGCUUU--AGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.