miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24857 5' -56.8 NC_005284.1 + 33391 0.66 0.601231
Target:  5'- aGaCCCGGCaGCAcUCGaCCGccagCAGUCa -3'
miRNA:   3'- gC-GGGCCG-CGU-AGC-GGCuuuaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 112 0.69 0.455082
Target:  5'- cCGCUCGcGCGCcgucuUCGCCGcguGA-CAGUCa -3'
miRNA:   3'- -GCGGGC-CGCGu----AGCGGCu--UUaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 8337 0.7 0.398425
Target:  5'- aCGCUCGGCgGCAuUCGgCGAcggcGAUCGGUUc -3'
miRNA:   3'- -GCGGGCCG-CGU-AGCgGCU----UUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 27867 1.09 0.000748
Target:  5'- cCGCCCGGCGCAUCGCCGAAAUCAGUCc -3'
miRNA:   3'- -GCGGGCCGCGUAGCGGCUUUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 40219 0.67 0.558061
Target:  5'- uCGCCaaGCGCAacgcacagCGCCGAAAUCGuUCc -3'
miRNA:   3'- -GCGGgcCGCGUa-------GCGGCUUUAGUcAG- -5'
24857 5' -56.8 NC_005284.1 + 35818 0.67 0.558061
Target:  5'- uCGCCCGcGUagaucguuGCGUCGCCGGccAUCGG-Cg -3'
miRNA:   3'- -GCGGGC-CG--------CGUAGCGGCUu-UAGUCaG- -5'
24857 5' -56.8 NC_005284.1 + 38272 0.67 0.547395
Target:  5'- aGCCCcacgauGgGCccCGCCGAGAUCAcGUCg -3'
miRNA:   3'- gCGGGc-----CgCGuaGCGGCUUUAGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 44661 0.68 0.526265
Target:  5'- aGCgCCGucuGCGcCGUCGCCGcgcuuUCGGUCg -3'
miRNA:   3'- gCG-GGC---CGC-GUAGCGGCuuu--AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 21523 0.68 0.515814
Target:  5'- aCGCgCGGCaGCAUCGCCcacugcGGAggCGGUg -3'
miRNA:   3'- -GCGgGCCG-CGUAGCGG------CUUuaGUCAg -5'
24857 5' -56.8 NC_005284.1 + 23884 0.69 0.464944
Target:  5'- cCGCCCGaUGCAUC-CCGAcugggcUCGGUCg -3'
miRNA:   3'- -GCGGGCcGCGUAGcGGCUuu----AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 48139 0.68 0.484995
Target:  5'- -aCCCGGCGCGUCuuucuGCCGAAGUg---- -3'
miRNA:   3'- gcGGGCCGCGUAG-----CGGCUUUAgucag -5'
24857 5' -56.8 NC_005284.1 + 50961 0.68 0.526265
Target:  5'- gCGUUCGGCGCuUCGUCGAuccaCAGaUCg -3'
miRNA:   3'- -GCGGGCCGCGuAGCGGCUuua-GUC-AG- -5'
24857 5' -56.8 NC_005284.1 + 35964 0.66 0.601231
Target:  5'- aCGCCCGGCcccuUCGCCGGGAaccaCGGcCc -3'
miRNA:   3'- -GCGGGCCGcgu-AGCGGCUUUa---GUCaG- -5'
24857 5' -56.8 NC_005284.1 + 44771 0.68 0.484995
Target:  5'- aCGCUCGGCuugcGCAagGCCGcgGUCcGUCu -3'
miRNA:   3'- -GCGGGCCG----CGUagCGGCuuUAGuCAG- -5'
24857 5' -56.8 NC_005284.1 + 48806 0.67 0.568785
Target:  5'- cCGCCCGaauCGCAUCGUucgCGAcGAUCGGaUCg -3'
miRNA:   3'- -GCGGGCc--GCGUAGCG---GCU-UUAGUC-AG- -5'
24857 5' -56.8 NC_005284.1 + 29548 0.68 0.526265
Target:  5'- --aUUGGCGuCAUCGUCGGAG-CAGUCa -3'
miRNA:   3'- gcgGGCCGC-GUAGCGGCUUUaGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 23349 0.68 0.484995
Target:  5'- gGCCCGGCGCGcCGCagcGGcgCAcGUCg -3'
miRNA:   3'- gCGGGCCGCGUaGCGgc-UUuaGU-CAG- -5'
24857 5' -56.8 NC_005284.1 + 5426 0.69 0.426194
Target:  5'- gCGCUCGGCGaagcugCGaCCGAuaguUCGGUCg -3'
miRNA:   3'- -GCGGGCCGCgua---GC-GGCUuu--AGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 7905 0.67 0.568785
Target:  5'- aCGCCgGGUucaAUCGCCGGcgcaagguccGGUCGGUUg -3'
miRNA:   3'- -GCGGgCCGcg-UAGCGGCU----------UUAGUCAG- -5'
24857 5' -56.8 NC_005284.1 + 45355 0.67 0.556992
Target:  5'- cCGCCCGGcCGCGagcgacaCGCCGAGuuUCAcgaugccGUCg -3'
miRNA:   3'- -GCGGGCC-GCGUa------GCGGCUUu-AGU-------CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.