Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 10022 | 0.65 | 0.780827 |
Target: 5'- gCCUUgcgcaAGCCGagcgugaUGUCGCGCuuGCCACg- -3' miRNA: 3'- -GGAG-----UUGGC-------AUAGCGCGcuCGGUGag -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 44856 | 0.66 | 0.729413 |
Target: 5'- gCCUCAagcGCCGUAcgCcgcugcugcgcgaGCGCGAGCgACg- -3' miRNA: 3'- -GGAGU---UGGCAUa-G-------------CGCGCUCGgUGag -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 39925 | 0.66 | 0.751385 |
Target: 5'- -gUCGGCUGcugCGUuuuCGAGCCACUCg -3' miRNA: 3'- ggAGUUGGCauaGCGc--GCUCGGUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 23167 | 0.66 | 0.771815 |
Target: 5'- --cCGAUCGUcgCgGCGCGuuCCGCUCg -3' miRNA: 3'- ggaGUUGGCAuaG-CGCGCucGGUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 43196 | 0.66 | 0.761666 |
Target: 5'- gCUCGGCCGcguaGUCGC-CGAGCUccGCgUCg -3' miRNA: 3'- gGAGUUGGCa---UAGCGcGCUCGG--UG-AG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 4769 | 0.66 | 0.755513 |
Target: 5'- uCCUUGAgcaagcagcgguacgUCGUGggGCGCGAGCCuucgaugcGCUCg -3' miRNA: 3'- -GGAGUU---------------GGCAUagCGCGCUCGG--------UGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 7304 | 0.66 | 0.751385 |
Target: 5'- uCCUCGgugugGCCGacGUCGagcauGCGAGCCAucuuCUCg -3' miRNA: 3'- -GGAGU-----UGGCa-UAGCg----CGCUCGGU----GAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 28211 | 0.66 | 0.751385 |
Target: 5'- gCUCGACUGUG--GCGaacGCCACUCu -3' miRNA: 3'- gGAGUUGGCAUagCGCgcuCGGUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 32152 | 0.66 | 0.748276 |
Target: 5'- --cCGAUCGUaacgaucgaugcagGUCGCccaauCGAGCCGCUCg -3' miRNA: 3'- ggaGUUGGCA--------------UAGCGc----GCUCGGUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 41592 | 0.66 | 0.73047 |
Target: 5'- -aUCAA-CGUAcgCGCGCGAGgCCGCg- -3' miRNA: 3'- ggAGUUgGCAUa-GCGCGCUC-GGUGag -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 46615 | 0.66 | 0.73047 |
Target: 5'- uCUUCGACCGgGUCGaCGuCGAGCUugccgaAUUCg -3' miRNA: 3'- -GGAGUUGGCaUAGC-GC-GCUCGG------UGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 51222 | 0.67 | 0.681023 |
Target: 5'- aCUCGccaagcgcuGCaCGUGUCGUucaugauucuggcgaGCGAGCCACg- -3' miRNA: 3'- gGAGU---------UG-GCAUAGCG---------------CGCUCGGUGag -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 20770 | 0.67 | 0.718793 |
Target: 5'- uCCUCGACCGccUCGaaCGCGcagaaucGGCC-CUCg -3' miRNA: 3'- -GGAGUUGGCauAGC--GCGC-------UCGGuGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 51307 | 0.67 | 0.708087 |
Target: 5'- uCCUgcgCAGCCGUagccGUCGUGUgcucaccGAGCUugUCg -3' miRNA: 3'- -GGA---GUUGGCA----UAGCGCG-------CUCGGugAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 36315 | 0.67 | 0.709161 |
Target: 5'- uUCUCGGCgCGcaccCGCGCGAGgUACUUg -3' miRNA: 3'- -GGAGUUG-GCaua-GCGCGCUCgGUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 43528 | 0.67 | 0.687551 |
Target: 5'- cCCUUcGCC-----GCGCGAGCCGCUg -3' miRNA: 3'- -GGAGuUGGcauagCGCGCUCGGUGAg -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 3520 | 0.67 | 0.687551 |
Target: 5'- gUUCGAagcaCGUucuUCGCGCGuGGCuCGCUCg -3' miRNA: 3'- gGAGUUg---GCAu--AGCGCGC-UCG-GUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 51691 | 0.68 | 0.62179 |
Target: 5'- aUCUCGAgCGcaguuUCgGCGCGAGCCAUa- -3' miRNA: 3'- -GGAGUUgGCau---AG-CGCGCUCGGUGag -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 1213 | 0.68 | 0.632786 |
Target: 5'- ---uGACCGgcaugggCGCGCGccggcAGCCGCUCa -3' miRNA: 3'- ggagUUGGCaua----GCGCGC-----UCGGUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 39811 | 0.68 | 0.665729 |
Target: 5'- gCUUCAACCGgg-C-CGCGuGCCGCa- -3' miRNA: 3'- -GGAGUUGGCauaGcGCGCuCGGUGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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