Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 51691 | 0.68 | 0.62179 |
Target: 5'- aUCUCGAgCGcaguuUCgGCGCGAGCCAUa- -3' miRNA: 3'- -GGAGUUgGCau---AG-CGCGCUCGGUGag -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 26824 | 0.69 | 0.556323 |
Target: 5'- gCUUCAGCauucgaCGuCGUGAGCCACUCu -3' miRNA: 3'- -GGAGUUGgcaua-GC-GCGCUCGGUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 9503 | 0.69 | 0.56713 |
Target: 5'- aCUCAGCCaUGcCGCGC-AGCCGCg- -3' miRNA: 3'- gGAGUUGGcAUaGCGCGcUCGGUGag -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 43000 | 0.69 | 0.599835 |
Target: 5'- gCCUCGGCCGUGUUGaUGCGcucgaucucGGCgaugUACUCg -3' miRNA: 3'- -GGAGUUGGCAUAGC-GCGC---------UCG----GUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 9411 | 0.69 | 0.56713 |
Target: 5'- aCCUCGACgGcAUCGUgaaacucgGCGuGUCGCUCg -3' miRNA: 3'- -GGAGUUGgCaUAGCG--------CGCuCGGUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 36339 | 0.69 | 0.57799 |
Target: 5'- uCUUCAAUCGccuucucgAUCGCGCcGGCCGCg- -3' miRNA: 3'- -GGAGUUGGCa-------UAGCGCGcUCGGUGag -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 25529 | 0.69 | 0.57799 |
Target: 5'- --gCGGCCGUcGUCGUGCGcgcGUCGCUCu -3' miRNA: 3'- ggaGUUGGCA-UAGCGCGCu--CGGUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 16697 | 0.7 | 0.545576 |
Target: 5'- aCCUCGcgucuUCGUccgCGCGaCGAGCCACaUCg -3' miRNA: 3'- -GGAGUu----GGCAua-GCGC-GCUCGGUG-AG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 47935 | 0.71 | 0.472605 |
Target: 5'- cCCUCcgagcacacGAUCG-AUCGCGCGcGCCAaCUCg -3' miRNA: 3'- -GGAG---------UUGGCaUAGCGCGCuCGGU-GAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 14846 | 0.71 | 0.472605 |
Target: 5'- --cCGACCGUGUCG-GuCGAGUgGCUCg -3' miRNA: 3'- ggaGUUGGCAUAGCgC-GCUCGgUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 43450 | 0.71 | 0.452655 |
Target: 5'- gCCUCGACgCGcaGUUGCGCGAuCCGCUg -3' miRNA: 3'- -GGAGUUG-GCa-UAGCGCGCUcGGUGAg -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 33964 | 0.71 | 0.472605 |
Target: 5'- uCgUCGGCCGg--CGCugcuGCGGGCUGCUCg -3' miRNA: 3'- -GgAGUUGGCauaGCG----CGCUCGGUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 42857 | 0.71 | 0.442853 |
Target: 5'- aCCUCGcaggaaguagaGCCG-AUUGgGCGGGCCuCUCg -3' miRNA: 3'- -GGAGU-----------UGGCaUAGCgCGCUCGGuGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 44403 | 0.72 | 0.433172 |
Target: 5'- gCCUCuuGCU---UCGUGCGcAGCCGCUCa -3' miRNA: 3'- -GGAGu-UGGcauAGCGCGC-UCGGUGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 47891 | 0.73 | 0.343617 |
Target: 5'- aCCUCAACCGcgcUUGCGCGAGCagUUCc -3' miRNA: 3'- -GGAGUUGGCau-AGCGCGCUCGguGAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 25672 | 0.79 | 0.145288 |
Target: 5'- --gCAGCCGU-UCGCGCGAGCCAagcCUCu -3' miRNA: 3'- ggaGUUGGCAuAGCGCGCUCGGU---GAG- -5' |
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24860 | 3' | -54.7 | NC_005284.1 | + | 24501 | 1.12 | 0.000744 |
Target: 5'- gCCUCAACCGUAUCGCGCGAGCCACUCg -3' miRNA: 3'- -GGAGUUGGCAUAGCGCGCUCGGUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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