miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 3' -54.7 NC_005284.1 + 24501 1.12 0.000744
Target:  5'- gCCUCAACCGUAUCGCGCGAGCCACUCg -3'
miRNA:   3'- -GGAGUUGGCAUAGCGCGCUCGGUGAG- -5'
24860 3' -54.7 NC_005284.1 + 25672 0.79 0.145288
Target:  5'- --gCAGCCGU-UCGCGCGAGCCAagcCUCu -3'
miRNA:   3'- ggaGUUGGCAuAGCGCGCUCGGU---GAG- -5'
24860 3' -54.7 NC_005284.1 + 47891 0.73 0.343617
Target:  5'- aCCUCAACCGcgcUUGCGCGAGCagUUCc -3'
miRNA:   3'- -GGAGUUGGCau-AGCGCGCUCGguGAG- -5'
24860 3' -54.7 NC_005284.1 + 44403 0.72 0.433172
Target:  5'- gCCUCuuGCU---UCGUGCGcAGCCGCUCa -3'
miRNA:   3'- -GGAGu-UGGcauAGCGCGC-UCGGUGAG- -5'
24860 3' -54.7 NC_005284.1 + 42857 0.71 0.442853
Target:  5'- aCCUCGcaggaaguagaGCCG-AUUGgGCGGGCCuCUCg -3'
miRNA:   3'- -GGAGU-----------UGGCaUAGCgCGCUCGGuGAG- -5'
24860 3' -54.7 NC_005284.1 + 43450 0.71 0.452655
Target:  5'- gCCUCGACgCGcaGUUGCGCGAuCCGCUg -3'
miRNA:   3'- -GGAGUUG-GCa-UAGCGCGCUcGGUGAg -5'
24860 3' -54.7 NC_005284.1 + 33964 0.71 0.472605
Target:  5'- uCgUCGGCCGg--CGCugcuGCGGGCUGCUCg -3'
miRNA:   3'- -GgAGUUGGCauaGCG----CGCUCGGUGAG- -5'
24860 3' -54.7 NC_005284.1 + 47935 0.71 0.472605
Target:  5'- cCCUCcgagcacacGAUCG-AUCGCGCGcGCCAaCUCg -3'
miRNA:   3'- -GGAG---------UUGGCaUAGCGCGCuCGGU-GAG- -5'
24860 3' -54.7 NC_005284.1 + 14846 0.71 0.472605
Target:  5'- --cCGACCGUGUCG-GuCGAGUgGCUCg -3'
miRNA:   3'- ggaGUUGGCAUAGCgC-GCUCGgUGAG- -5'
24860 3' -54.7 NC_005284.1 + 16697 0.7 0.545576
Target:  5'- aCCUCGcgucuUCGUccgCGCGaCGAGCCACaUCg -3'
miRNA:   3'- -GGAGUu----GGCAua-GCGC-GCUCGGUG-AG- -5'
24860 3' -54.7 NC_005284.1 + 26824 0.69 0.556323
Target:  5'- gCUUCAGCauucgaCGuCGUGAGCCACUCu -3'
miRNA:   3'- -GGAGUUGgcaua-GC-GCGCUCGGUGAG- -5'
24860 3' -54.7 NC_005284.1 + 9503 0.69 0.56713
Target:  5'- aCUCAGCCaUGcCGCGC-AGCCGCg- -3'
miRNA:   3'- gGAGUUGGcAUaGCGCGcUCGGUGag -5'
24860 3' -54.7 NC_005284.1 + 9411 0.69 0.56713
Target:  5'- aCCUCGACgGcAUCGUgaaacucgGCGuGUCGCUCg -3'
miRNA:   3'- -GGAGUUGgCaUAGCG--------CGCuCGGUGAG- -5'
24860 3' -54.7 NC_005284.1 + 25529 0.69 0.57799
Target:  5'- --gCGGCCGUcGUCGUGCGcgcGUCGCUCu -3'
miRNA:   3'- ggaGUUGGCA-UAGCGCGCu--CGGUGAG- -5'
24860 3' -54.7 NC_005284.1 + 36339 0.69 0.57799
Target:  5'- uCUUCAAUCGccuucucgAUCGCGCcGGCCGCg- -3'
miRNA:   3'- -GGAGUUGGCa-------UAGCGCGcUCGGUGag -5'
24860 3' -54.7 NC_005284.1 + 43000 0.69 0.599835
Target:  5'- gCCUCGGCCGUGUUGaUGCGcucgaucucGGCgaugUACUCg -3'
miRNA:   3'- -GGAGUUGGCAUAGC-GCGC---------UCG----GUGAG- -5'
24860 3' -54.7 NC_005284.1 + 51691 0.68 0.62179
Target:  5'- aUCUCGAgCGcaguuUCgGCGCGAGCCAUa- -3'
miRNA:   3'- -GGAGUUgGCau---AG-CGCGCUCGGUGag -5'
24860 3' -54.7 NC_005284.1 + 1213 0.68 0.632786
Target:  5'- ---uGACCGgcaugggCGCGCGccggcAGCCGCUCa -3'
miRNA:   3'- ggagUUGGCaua----GCGCGC-----UCGGUGAG- -5'
24860 3' -54.7 NC_005284.1 + 33432 0.68 0.662443
Target:  5'- --cCGACCGUuguccgacucguugAUCGCGCGAcacgcgccccGCCAgUCg -3'
miRNA:   3'- ggaGUUGGCA--------------UAGCGCGCU----------CGGUgAG- -5'
24860 3' -54.7 NC_005284.1 + 39811 0.68 0.665729
Target:  5'- gCUUCAACCGgg-C-CGCGuGCCGCa- -3'
miRNA:   3'- -GGAGUUGGCauaGcGCGCuCGGUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.