Results 21 - 37 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 36339 | 0.69 | 0.57799 |
Target: 5'- uCUUCAAUCGccuucucgAUCGCGCcGGCCGCg- -3' miRNA: 3'- -GGAGUUGGCa-------UAGCGCGcUCGGUGag -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 39811 | 0.68 | 0.665729 |
Target: 5'- gCUUCAACCGgg-C-CGCGuGCCGCa- -3' miRNA: 3'- -GGAGUUGGCauaGcGCGCuCGGUGag -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 39925 | 0.66 | 0.751385 |
Target: 5'- -gUCGGCUGcugCGUuuuCGAGCCACUCg -3' miRNA: 3'- ggAGUUGGCauaGCGc--GCUCGGUGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 41592 | 0.66 | 0.73047 |
Target: 5'- -aUCAA-CGUAcgCGCGCGAGgCCGCg- -3' miRNA: 3'- ggAGUUgGCAUa-GCGCGCUC-GGUGag -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 42857 | 0.71 | 0.442853 |
Target: 5'- aCCUCGcaggaaguagaGCCG-AUUGgGCGGGCCuCUCg -3' miRNA: 3'- -GGAGU-----------UGGCaUAGCgCGCUCGGuGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 43000 | 0.69 | 0.599835 |
Target: 5'- gCCUCGGCCGUGUUGaUGCGcucgaucucGGCgaugUACUCg -3' miRNA: 3'- -GGAGUUGGCAUAGC-GCGC---------UCG----GUGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 43196 | 0.66 | 0.761666 |
Target: 5'- gCUCGGCCGcguaGUCGC-CGAGCUccGCgUCg -3' miRNA: 3'- gGAGUUGGCa---UAGCGcGCUCGG--UG-AG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 43450 | 0.71 | 0.452655 |
Target: 5'- gCCUCGACgCGcaGUUGCGCGAuCCGCUg -3' miRNA: 3'- -GGAGUUG-GCa-UAGCGCGCUcGGUGAg -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 43528 | 0.67 | 0.687551 |
Target: 5'- cCCUUcGCC-----GCGCGAGCCGCUg -3' miRNA: 3'- -GGAGuUGGcauagCGCGCUCGGUGAg -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 44403 | 0.72 | 0.433172 |
Target: 5'- gCCUCuuGCU---UCGUGCGcAGCCGCUCa -3' miRNA: 3'- -GGAGu-UGGcauAGCGCGC-UCGGUGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 44856 | 0.66 | 0.729413 |
Target: 5'- gCCUCAagcGCCGUAcgCcgcugcugcgcgaGCGCGAGCgACg- -3' miRNA: 3'- -GGAGU---UGGCAUa-G-------------CGCGCUCGgUGag -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 46615 | 0.66 | 0.73047 |
Target: 5'- uCUUCGACCGgGUCGaCGuCGAGCUugccgaAUUCg -3' miRNA: 3'- -GGAGUUGGCaUAGC-GC-GCUCGG------UGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 47891 | 0.73 | 0.343617 |
Target: 5'- aCCUCAACCGcgcUUGCGCGAGCagUUCc -3' miRNA: 3'- -GGAGUUGGCau-AGCGCGCUCGguGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 47935 | 0.71 | 0.472605 |
Target: 5'- cCCUCcgagcacacGAUCG-AUCGCGCGcGCCAaCUCg -3' miRNA: 3'- -GGAG---------UUGGCaUAGCGCGCuCGGU-GAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 51222 | 0.67 | 0.681023 |
Target: 5'- aCUCGccaagcgcuGCaCGUGUCGUucaugauucuggcgaGCGAGCCACg- -3' miRNA: 3'- gGAGU---------UG-GCAUAGCG---------------CGCUCGGUGag -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 51307 | 0.67 | 0.708087 |
Target: 5'- uCCUgcgCAGCCGUagccGUCGUGUgcucaccGAGCUugUCg -3' miRNA: 3'- -GGA---GUUGGCA----UAGCGCG-------CUCGGugAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 51691 | 0.68 | 0.62179 |
Target: 5'- aUCUCGAgCGcaguuUCgGCGCGAGCCAUa- -3' miRNA: 3'- -GGAGUUgGCau---AG-CGCGCUCGGUGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home