miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 3' -54.7 NC_005284.1 + 51691 0.68 0.62179
Target:  5'- aUCUCGAgCGcaguuUCgGCGCGAGCCAUa- -3'
miRNA:   3'- -GGAGUUgGCau---AG-CGCGCUCGGUGag -5'
24860 3' -54.7 NC_005284.1 + 51307 0.67 0.708087
Target:  5'- uCCUgcgCAGCCGUagccGUCGUGUgcucaccGAGCUugUCg -3'
miRNA:   3'- -GGA---GUUGGCA----UAGCGCG-------CUCGGugAG- -5'
24860 3' -54.7 NC_005284.1 + 51222 0.67 0.681023
Target:  5'- aCUCGccaagcgcuGCaCGUGUCGUucaugauucuggcgaGCGAGCCACg- -3'
miRNA:   3'- gGAGU---------UG-GCAUAGCG---------------CGCUCGGUGag -5'
24860 3' -54.7 NC_005284.1 + 47935 0.71 0.472605
Target:  5'- cCCUCcgagcacacGAUCG-AUCGCGCGcGCCAaCUCg -3'
miRNA:   3'- -GGAG---------UUGGCaUAGCGCGCuCGGU-GAG- -5'
24860 3' -54.7 NC_005284.1 + 47891 0.73 0.343617
Target:  5'- aCCUCAACCGcgcUUGCGCGAGCagUUCc -3'
miRNA:   3'- -GGAGUUGGCau-AGCGCGCUCGguGAG- -5'
24860 3' -54.7 NC_005284.1 + 46615 0.66 0.73047
Target:  5'- uCUUCGACCGgGUCGaCGuCGAGCUugccgaAUUCg -3'
miRNA:   3'- -GGAGUUGGCaUAGC-GC-GCUCGG------UGAG- -5'
24860 3' -54.7 NC_005284.1 + 44856 0.66 0.729413
Target:  5'- gCCUCAagcGCCGUAcgCcgcugcugcgcgaGCGCGAGCgACg- -3'
miRNA:   3'- -GGAGU---UGGCAUa-G-------------CGCGCUCGgUGag -5'
24860 3' -54.7 NC_005284.1 + 44403 0.72 0.433172
Target:  5'- gCCUCuuGCU---UCGUGCGcAGCCGCUCa -3'
miRNA:   3'- -GGAGu-UGGcauAGCGCGC-UCGGUGAG- -5'
24860 3' -54.7 NC_005284.1 + 43528 0.67 0.687551
Target:  5'- cCCUUcGCC-----GCGCGAGCCGCUg -3'
miRNA:   3'- -GGAGuUGGcauagCGCGCUCGGUGAg -5'
24860 3' -54.7 NC_005284.1 + 43450 0.71 0.452655
Target:  5'- gCCUCGACgCGcaGUUGCGCGAuCCGCUg -3'
miRNA:   3'- -GGAGUUG-GCa-UAGCGCGCUcGGUGAg -5'
24860 3' -54.7 NC_005284.1 + 43196 0.66 0.761666
Target:  5'- gCUCGGCCGcguaGUCGC-CGAGCUccGCgUCg -3'
miRNA:   3'- gGAGUUGGCa---UAGCGcGCUCGG--UG-AG- -5'
24860 3' -54.7 NC_005284.1 + 43000 0.69 0.599835
Target:  5'- gCCUCGGCCGUGUUGaUGCGcucgaucucGGCgaugUACUCg -3'
miRNA:   3'- -GGAGUUGGCAUAGC-GCGC---------UCG----GUGAG- -5'
24860 3' -54.7 NC_005284.1 + 42857 0.71 0.442853
Target:  5'- aCCUCGcaggaaguagaGCCG-AUUGgGCGGGCCuCUCg -3'
miRNA:   3'- -GGAGU-----------UGGCaUAGCgCGCUCGGuGAG- -5'
24860 3' -54.7 NC_005284.1 + 41592 0.66 0.73047
Target:  5'- -aUCAA-CGUAcgCGCGCGAGgCCGCg- -3'
miRNA:   3'- ggAGUUgGCAUa-GCGCGCUC-GGUGag -5'
24860 3' -54.7 NC_005284.1 + 39925 0.66 0.751385
Target:  5'- -gUCGGCUGcugCGUuuuCGAGCCACUCg -3'
miRNA:   3'- ggAGUUGGCauaGCGc--GCUCGGUGAG- -5'
24860 3' -54.7 NC_005284.1 + 39811 0.68 0.665729
Target:  5'- gCUUCAACCGgg-C-CGCGuGCCGCa- -3'
miRNA:   3'- -GGAGUUGGCauaGcGCGCuCGGUGag -5'
24860 3' -54.7 NC_005284.1 + 36339 0.69 0.57799
Target:  5'- uCUUCAAUCGccuucucgAUCGCGCcGGCCGCg- -3'
miRNA:   3'- -GGAGUUGGCa-------UAGCGCGcUCGGUGag -5'
24860 3' -54.7 NC_005284.1 + 36315 0.67 0.709161
Target:  5'- uUCUCGGCgCGcaccCGCGCGAGgUACUUg -3'
miRNA:   3'- -GGAGUUG-GCaua-GCGCGCUCgGUGAG- -5'
24860 3' -54.7 NC_005284.1 + 33964 0.71 0.472605
Target:  5'- uCgUCGGCCGg--CGCugcuGCGGGCUGCUCg -3'
miRNA:   3'- -GgAGUUGGCauaGCG----CGCUCGGUGAG- -5'
24860 3' -54.7 NC_005284.1 + 33432 0.68 0.662443
Target:  5'- --cCGACCGUuguccgacucguugAUCGCGCGAcacgcgccccGCCAgUCg -3'
miRNA:   3'- ggaGUUGGCA--------------UAGCGCGCU----------CGGUgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.