Results 21 - 37 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 14846 | 0.71 | 0.472605 |
Target: 5'- --cCGACCGUGUCG-GuCGAGUgGCUCg -3' miRNA: 3'- ggaGUUGGCAUAGCgC-GCUCGgUGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 47935 | 0.71 | 0.472605 |
Target: 5'- cCCUCcgagcacacGAUCG-AUCGCGCGcGCCAaCUCg -3' miRNA: 3'- -GGAG---------UUGGCaUAGCGCGCuCGGU-GAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 43450 | 0.71 | 0.452655 |
Target: 5'- gCCUCGACgCGcaGUUGCGCGAuCCGCUg -3' miRNA: 3'- -GGAGUUG-GCa-UAGCGCGCUcGGUGAg -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 44403 | 0.72 | 0.433172 |
Target: 5'- gCCUCuuGCU---UCGUGCGcAGCCGCUCa -3' miRNA: 3'- -GGAGu-UGGcauAGCGCGC-UCGGUGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 3520 | 0.67 | 0.687551 |
Target: 5'- gUUCGAagcaCGUucuUCGCGCGuGGCuCGCUCg -3' miRNA: 3'- gGAGUUg---GCAu--AGCGCGC-UCG-GUGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 43528 | 0.67 | 0.687551 |
Target: 5'- cCCUUcGCC-----GCGCGAGCCGCUg -3' miRNA: 3'- -GGAGuUGGcauagCGCGCUCGGUGAg -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 51307 | 0.67 | 0.708087 |
Target: 5'- uCCUgcgCAGCCGUagccGUCGUGUgcucaccGAGCUugUCg -3' miRNA: 3'- -GGA---GUUGGCA----UAGCGCG-------CUCGGugAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 43196 | 0.66 | 0.761666 |
Target: 5'- gCUCGGCCGcguaGUCGC-CGAGCUccGCgUCg -3' miRNA: 3'- gGAGUUGGCa---UAGCGcGCUCGG--UG-AG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 4769 | 0.66 | 0.755513 |
Target: 5'- uCCUUGAgcaagcagcgguacgUCGUGggGCGCGAGCCuucgaugcGCUCg -3' miRNA: 3'- -GGAGUU---------------GGCAUagCGCGCUCGG--------UGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 7304 | 0.66 | 0.751385 |
Target: 5'- uCCUCGgugugGCCGacGUCGagcauGCGAGCCAucuuCUCg -3' miRNA: 3'- -GGAGU-----UGGCa-UAGCg----CGCUCGGU----GAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 28211 | 0.66 | 0.751385 |
Target: 5'- gCUCGACUGUG--GCGaacGCCACUCu -3' miRNA: 3'- gGAGUUGGCAUagCGCgcuCGGUGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 32152 | 0.66 | 0.748276 |
Target: 5'- --cCGAUCGUaacgaucgaugcagGUCGCccaauCGAGCCGCUCg -3' miRNA: 3'- ggaGUUGGCA--------------UAGCGc----GCUCGGUGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 46615 | 0.66 | 0.73047 |
Target: 5'- uCUUCGACCGgGUCGaCGuCGAGCUugccgaAUUCg -3' miRNA: 3'- -GGAGUUGGCaUAGC-GC-GCUCGG------UGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 44856 | 0.66 | 0.729413 |
Target: 5'- gCCUCAagcGCCGUAcgCcgcugcugcgcgaGCGCGAGCgACg- -3' miRNA: 3'- -GGAGU---UGGCAUa-G-------------CGCGCUCGgUGag -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 20770 | 0.67 | 0.718793 |
Target: 5'- uCCUCGACCGccUCGaaCGCGcagaaucGGCC-CUCg -3' miRNA: 3'- -GGAGUUGGCauAGC--GCGC-------UCGGuGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 36315 | 0.67 | 0.709161 |
Target: 5'- uUCUCGGCgCGcaccCGCGCGAGgUACUUg -3' miRNA: 3'- -GGAGUUG-GCaua-GCGCGCUCgGUGAG- -5' |
|||||||
24860 | 3' | -54.7 | NC_005284.1 | + | 24501 | 1.12 | 0.000744 |
Target: 5'- gCCUCAACCGUAUCGCGCGAGCCACUCg -3' miRNA: 3'- -GGAGUUGGCAUAGCGCGCUCGGUGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home