miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 40168 0.66 0.446907
Target:  5'- uCGAgguaGCGCGCgagCGUUCGGCGccggaacacuuucgcGCCGACg -3'
miRNA:   3'- uGCU----UGCGCGg--GCGAGCUGC---------------CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 9234 0.66 0.443169
Target:  5'- uCGAG-GCGCUgaCGCgcgCGGCGGgCGGCa -3'
miRNA:   3'- uGCUUgCGCGG--GCGa--GCUGCCgGCUG- -5'
24860 5' -61.3 NC_005284.1 + 1633 0.66 0.443169
Target:  5'- uCGAcaugGCGCGCaaGCUCGAuuugaacaguaUGGcCCGGCu -3'
miRNA:   3'- uGCU----UGCGCGggCGAGCU-----------GCC-GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 21818 0.66 0.443169
Target:  5'- gGCGAcgGCGUGCCCggcGCUUccaGCGccGCCGGCg -3'
miRNA:   3'- -UGCU--UGCGCGGG---CGAGc--UGC--CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 6987 0.66 0.443169
Target:  5'- cGCGuacauGGCGCGCUcgacauggCGCUCGcCGGgCUGACu -3'
miRNA:   3'- -UGC-----UUGCGCGG--------GCGAGCuGCC-GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 23175 0.66 0.443169
Target:  5'- cGCG-GCGCGuUCCGCUCGugugAUGGCUG-Ca -3'
miRNA:   3'- -UGCuUGCGC-GGGCGAGC----UGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 45312 0.66 0.443169
Target:  5'- cCGAAUGCGCCUuaUCGucacGCCGAUc -3'
miRNA:   3'- uGCUUGCGCGGGcgAGCugc-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 5410 0.66 0.433903
Target:  5'- uGCG-GCGCGCCaGCUCG-CGcUCGGCg -3'
miRNA:   3'- -UGCuUGCGCGGgCGAGCuGCcGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 42027 0.66 0.433903
Target:  5'- cGCGAGCGCguGCCgGC-CGAgCGGCaugGAUa -3'
miRNA:   3'- -UGCUUGCG--CGGgCGaGCU-GCCGg--CUG- -5'
24860 5' -61.3 NC_005284.1 + 18119 0.66 0.431146
Target:  5'- aACGAAauucugagccCGCGCCCgGCUCuccccucggauaugGGCGGCCu-- -3'
miRNA:   3'- -UGCUU----------GCGCGGG-CGAG--------------CUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 46808 0.66 0.427484
Target:  5'- gGCGGAuuucucgaccucuuUGCGCCCGguccgaucgaugaUCGAUGGCCG-Cg -3'
miRNA:   3'- -UGCUU--------------GCGCGGGCg------------AGCUGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 38603 0.66 0.424751
Target:  5'- cACGAuGC-CGCCCaGCgccaUCGACGcGCCGAg -3'
miRNA:   3'- -UGCU-UGcGCGGG-CG----AGCUGC-CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 1274 0.66 0.423842
Target:  5'- cCGGGCGCGgaaaugaaaaagcCCCGCgCGGCGaaCCGGCg -3'
miRNA:   3'- uGCUUGCGC-------------GGGCGaGCUGCc-GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 49159 0.66 0.415715
Target:  5'- gGCGGACGgGCCCgGCgaggCGAUGGagGAa -3'
miRNA:   3'- -UGCUUGCgCGGG-CGa---GCUGCCggCUg -5'
24860 5' -61.3 NC_005284.1 + 5504 0.66 0.415715
Target:  5'- aAUGGugGcCGCCCGCg-GGCGGUCa-- -3'
miRNA:   3'- -UGCUugC-GCGGGCGagCUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 15724 0.66 0.415715
Target:  5'- gGCGucugucGACGCGCgCGgUguggggcggaaUGugGGCCGACa -3'
miRNA:   3'- -UGC------UUGCGCGgGCgA-----------GCugCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 45436 0.66 0.415715
Target:  5'- cGCGcuCGCGCCCGUcgcuugaucCGACucGCCGAUa -3'
miRNA:   3'- -UGCuuGCGCGGGCGa--------GCUGc-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 9717 0.66 0.406797
Target:  5'- cACGAGCGCguaGCCgCGCUCGcCcGCCcACg -3'
miRNA:   3'- -UGCUUGCG---CGG-GCGAGCuGcCGGcUG- -5'
24860 5' -61.3 NC_005284.1 + 38896 0.66 0.406797
Target:  5'- cCGAuagcGCGCGCaCCGcCUCuGCGG-CGACg -3'
miRNA:   3'- uGCU----UGCGCG-GGC-GAGcUGCCgGCUG- -5'
24860 5' -61.3 NC_005284.1 + 327 0.66 0.405912
Target:  5'- gACGAuugcCGCGCaCCGCgucggacuuccauUUGACGGCCu-- -3'
miRNA:   3'- -UGCUu---GCGCG-GGCG-------------AGCUGCCGGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.