Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 46468 | 0.66 | 0.398 |
Target: 5'- cCGAGCguccgacgcugGCGUuagCUGCUCGugcAUGGCCGACg -3' miRNA: 3'- uGCUUG-----------CGCG---GGCGAGC---UGCCGGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 49159 | 0.66 | 0.415715 |
Target: 5'- gGCGGACGgGCCCgGCgaggCGAUGGagGAa -3' miRNA: 3'- -UGCUUGCgCGGG-CGa---GCUGCCggCUg -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 15724 | 0.66 | 0.415715 |
Target: 5'- gGCGucugucGACGCGCgCGgUguggggcggaaUGugGGCCGACa -3' miRNA: 3'- -UGC------UUGCGCGgGCgA-----------GCugCCGGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 9234 | 0.66 | 0.443169 |
Target: 5'- uCGAG-GCGCUgaCGCgcgCGGCGGgCGGCa -3' miRNA: 3'- uGCUUgCGCGG--GCGa--GCUGCCgGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 42027 | 0.66 | 0.433903 |
Target: 5'- cGCGAGCGCguGCCgGC-CGAgCGGCaugGAUa -3' miRNA: 3'- -UGCUUGCG--CGGgCGaGCU-GCCGg--CUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 1633 | 0.66 | 0.443169 |
Target: 5'- uCGAcaugGCGCGCaaGCUCGAuuugaacaguaUGGcCCGGCu -3' miRNA: 3'- uGCU----UGCGCGggCGAGCU-----------GCC-GGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 47973 | 0.67 | 0.389327 |
Target: 5'- uGCGAAU-CGCCCcCUCGGCcucGCCGAUc -3' miRNA: 3'- -UGCUUGcGCGGGcGAGCUGc--CGGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 5283 | 0.67 | 0.355085 |
Target: 5'- uGCGAACgaauuccucgucgGCGCCUuCUCGAUGG-CGGCu -3' miRNA: 3'- -UGCUUG-------------CGCGGGcGAGCUGCCgGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 20631 | 0.67 | 0.36406 |
Target: 5'- -gGGACGCuGCUauacaaCGGCGGCCGACa -3' miRNA: 3'- ugCUUGCG-CGGgcga--GCUGCCGGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 21494 | 0.67 | 0.372355 |
Target: 5'- uUGGcCGCG-CUGCUuggcaUGGCGGCCGGCg -3' miRNA: 3'- uGCUuGCGCgGGCGA-----GCUGCCGGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 24723 | 0.67 | 0.372355 |
Target: 5'- gGCGaAACGaCGCCCGUgCGucuuCGGCCcGCu -3' miRNA: 3'- -UGC-UUGC-GCGGGCGaGCu---GCCGGcUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 25560 | 0.67 | 0.375709 |
Target: 5'- uUGAGCGUGCauucgaucccgccguCCGCgCGGCGguuGCCGACu -3' miRNA: 3'- uGCUUGCGCG---------------GGCGaGCUGC---CGGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 7044 | 0.67 | 0.389327 |
Target: 5'- gACGuACGCGCgCCGC-CGuACcGCCGAg -3' miRNA: 3'- -UGCuUGCGCG-GGCGaGC-UGcCGGCUg -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 32026 | 0.67 | 0.392781 |
Target: 5'- gACGAucGCGCGCCC-CUUGAucgaccgcagccgcuCGGCCa-- -3' miRNA: 3'- -UGCU--UGCGCGGGcGAGCU---------------GCCGGcug -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 14621 | 0.67 | 0.378238 |
Target: 5'- cCGAACGCucGCgCGCuaccUCGAcgccgugaauuuucCGGCCGGCa -3' miRNA: 3'- uGCUUGCG--CGgGCG----AGCU--------------GCCGGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 9446 | 0.67 | 0.369853 |
Target: 5'- aACGAACGCGUUCGCcucuucaagugugaUCGGCGuGaCGAUa -3' miRNA: 3'- -UGCUUGCGCGGGCG--------------AGCUGC-CgGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 16678 | 0.67 | 0.380778 |
Target: 5'- uCGAGCGUgagGCCgGCgUCGGCGugccGCUGACg -3' miRNA: 3'- uGCUUGCG---CGGgCG-AGCUGC----CGGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 22603 | 0.67 | 0.389327 |
Target: 5'- cGCGAAUGCGUacaucgagCgGCUCGAUuGGgCGACc -3' miRNA: 3'- -UGCUUGCGCG--------GgCGAGCUG-CCgGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 51749 | 0.67 | 0.392781 |
Target: 5'- cGCG-GCGCGCCUGCgggaagUGGaggcguuagcgguaGGCCGGCu -3' miRNA: 3'- -UGCuUGCGCGGGCGa-----GCUg-------------CCGGCUG- -5' |
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24860 | 5' | -61.3 | NC_005284.1 | + | 47781 | 0.67 | 0.380778 |
Target: 5'- uCGAgGCgGCGCUCGCggaggCGACGGgCGAg -3' miRNA: 3'- uGCU-UG-CGCGGGCGa----GCUGCCgGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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