Results 1 - 20 of 106 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 24535 | 1.08 | 0.000346 |
Target: 5'- aACGAACGCGCCCGCUCGACGGCCGACu -3' miRNA: 3'- -UGCUUGCGCGGGCGAGCUGCCGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 33946 | 0.88 | 0.011582 |
Target: 5'- uGCGGaaGCGcCGCCCGCUCGuCGGCCGGCg -3' miRNA: 3'- -UGCU--UGC-GCGGGCGAGCuGCCGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 36904 | 0.84 | 0.023528 |
Target: 5'- cGCGGAUGCGCCCGC-CGAUccggGGCCGGCc -3' miRNA: 3'- -UGCUUGCGCGGGCGaGCUG----CCGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 33356 | 0.83 | 0.029486 |
Target: 5'- uCGAACGacacCGCCCGUUCGuCGGCCGGCg -3' miRNA: 3'- uGCUUGC----GCGGGCGAGCuGCCGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 4618 | 0.78 | 0.064475 |
Target: 5'- cAUGAACGUGCCUGC--GACGGUCGGCa -3' miRNA: 3'- -UGCUUGCGCGGGCGagCUGCCGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 38109 | 0.76 | 0.09467 |
Target: 5'- cACGccGACGCcgGCCucaCGCUCGACGGCCGGa -3' miRNA: 3'- -UGC--UUGCG--CGG---GCGAGCUGCCGGCUg -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 19715 | 0.76 | 0.092129 |
Target: 5'- gACGGagcgGCGCGCCUcauGCUCGACGGaaCGACa -3' miRNA: 3'- -UGCU----UGCGCGGG---CGAGCUGCCg-GCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 8740 | 0.75 | 0.102699 |
Target: 5'- -gGAGCGCuugccgucgagGCCUGCUCGACGcCCGGCg -3' miRNA: 3'- ugCUUGCG-----------CGGGCGAGCUGCcGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 14955 | 0.75 | 0.108403 |
Target: 5'- gGCGugaauAACGCGCgCCGUUCGGCGGCuuccugugCGACa -3' miRNA: 3'- -UGC-----UUGCGCG-GGCGAGCUGCCG--------GCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 21618 | 0.75 | 0.114404 |
Target: 5'- -aGAucucGCGCGCCgCGCUCGAC-GCCGAg -3' miRNA: 3'- ugCU----UGCGCGG-GCGAGCUGcCGGCUg -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 43825 | 0.74 | 0.123327 |
Target: 5'- aGCGAcuuguAUGCGUCCGCUCGuccggcgacgaGGCCGGCc -3' miRNA: 3'- -UGCU-----UGCGCGGGCGAGCug---------CCGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 6661 | 0.74 | 0.127345 |
Target: 5'- --aGACGCGCCgGguuuggCGACGGCCGGCg -3' miRNA: 3'- ugcUUGCGCGGgCga----GCUGCCGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 4172 | 0.74 | 0.133956 |
Target: 5'- gGCGAACGaCGUgaaucggCUGCUCGACGGCCu-- -3' miRNA: 3'- -UGCUUGC-GCG-------GGCGAGCUGCCGGcug -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 31433 | 0.73 | 0.14931 |
Target: 5'- gGCG-ACGUGCgCCGCUgCGGCGcGCCGGg -3' miRNA: 3'- -UGCuUGCGCG-GGCGA-GCUGC-CGGCUg -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 38834 | 0.72 | 0.179252 |
Target: 5'- gGCGAACGUgagGCCgGCgUCG-CGcGCCGACg -3' miRNA: 3'- -UGCUUGCG---CGGgCG-AGCuGC-CGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 24082 | 0.72 | 0.183941 |
Target: 5'- gGCGAACGCGUCCauuaugcagagcGCgUCGGCaagaaagccgccGGCCGGCu -3' miRNA: 3'- -UGCUUGCGCGGG------------CG-AGCUG------------CCGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 20818 | 0.72 | 0.183941 |
Target: 5'- uCGAGCa-GCCCGCagcagCGcCGGCCGACg -3' miRNA: 3'- uGCUUGcgCGGGCGa----GCuGCCGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 17894 | 0.72 | 0.17467 |
Target: 5'- gGCGGGCGCaUCCGCgCaGCGGCUGGCg -3' miRNA: 3'- -UGCUUGCGcGGGCGaGcUGCCGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 220 | 0.72 | 0.17467 |
Target: 5'- gGCGAcagucACGCGCCCuGCUUGcaaacAgGGCUGACa -3' miRNA: 3'- -UGCU-----UGCGCGGG-CGAGC-----UgCCGGCUG- -5' |
|||||||
24860 | 5' | -61.3 | NC_005284.1 | + | 21410 | 0.72 | 0.179252 |
Target: 5'- gGCGAGC-CGUCgGCagCGcCGGCCGACg -3' miRNA: 3'- -UGCUUGcGCGGgCGa-GCuGCCGGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home