miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 24535 1.08 0.000346
Target:  5'- aACGAACGCGCCCGCUCGACGGCCGACu -3'
miRNA:   3'- -UGCUUGCGCGGGCGAGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 33946 0.88 0.011582
Target:  5'- uGCGGaaGCGcCGCCCGCUCGuCGGCCGGCg -3'
miRNA:   3'- -UGCU--UGC-GCGGGCGAGCuGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 36904 0.84 0.023528
Target:  5'- cGCGGAUGCGCCCGC-CGAUccggGGCCGGCc -3'
miRNA:   3'- -UGCUUGCGCGGGCGaGCUG----CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 33356 0.83 0.029486
Target:  5'- uCGAACGacacCGCCCGUUCGuCGGCCGGCg -3'
miRNA:   3'- uGCUUGC----GCGGGCGAGCuGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 4618 0.78 0.064475
Target:  5'- cAUGAACGUGCCUGC--GACGGUCGGCa -3'
miRNA:   3'- -UGCUUGCGCGGGCGagCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 19715 0.76 0.092129
Target:  5'- gACGGagcgGCGCGCCUcauGCUCGACGGaaCGACa -3'
miRNA:   3'- -UGCU----UGCGCGGG---CGAGCUGCCg-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 38109 0.76 0.09467
Target:  5'- cACGccGACGCcgGCCucaCGCUCGACGGCCGGa -3'
miRNA:   3'- -UGC--UUGCG--CGG---GCGAGCUGCCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 8740 0.75 0.102699
Target:  5'- -gGAGCGCuugccgucgagGCCUGCUCGACGcCCGGCg -3'
miRNA:   3'- ugCUUGCG-----------CGGGCGAGCUGCcGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 14955 0.75 0.108403
Target:  5'- gGCGugaauAACGCGCgCCGUUCGGCGGCuuccugugCGACa -3'
miRNA:   3'- -UGC-----UUGCGCG-GGCGAGCUGCCG--------GCUG- -5'
24860 5' -61.3 NC_005284.1 + 21618 0.75 0.114404
Target:  5'- -aGAucucGCGCGCCgCGCUCGAC-GCCGAg -3'
miRNA:   3'- ugCU----UGCGCGG-GCGAGCUGcCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 43825 0.74 0.123327
Target:  5'- aGCGAcuuguAUGCGUCCGCUCGuccggcgacgaGGCCGGCc -3'
miRNA:   3'- -UGCU-----UGCGCGGGCGAGCug---------CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 6661 0.74 0.127345
Target:  5'- --aGACGCGCCgGguuuggCGACGGCCGGCg -3'
miRNA:   3'- ugcUUGCGCGGgCga----GCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 4172 0.74 0.133956
Target:  5'- gGCGAACGaCGUgaaucggCUGCUCGACGGCCu-- -3'
miRNA:   3'- -UGCUUGC-GCG-------GGCGAGCUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 31433 0.73 0.14931
Target:  5'- gGCG-ACGUGCgCCGCUgCGGCGcGCCGGg -3'
miRNA:   3'- -UGCuUGCGCG-GGCGA-GCUGC-CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 220 0.72 0.17467
Target:  5'- gGCGAcagucACGCGCCCuGCUUGcaaacAgGGCUGACa -3'
miRNA:   3'- -UGCU-----UGCGCGGG-CGAGC-----UgCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 17894 0.72 0.17467
Target:  5'- gGCGGGCGCaUCCGCgCaGCGGCUGGCg -3'
miRNA:   3'- -UGCUUGCGcGGGCGaGcUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 21410 0.72 0.179252
Target:  5'- gGCGAGC-CGUCgGCagCGcCGGCCGACg -3'
miRNA:   3'- -UGCUUGcGCGGgCGa-GCuGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 38834 0.72 0.179252
Target:  5'- gGCGAACGUgagGCCgGCgUCG-CGcGCCGACg -3'
miRNA:   3'- -UGCUUGCG---CGGgCG-AGCuGC-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 24082 0.72 0.183941
Target:  5'- gGCGAACGCGUCCauuaugcagagcGCgUCGGCaagaaagccgccGGCCGGCu -3'
miRNA:   3'- -UGCUUGCGCGGG------------CG-AGCUG------------CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 18783 0.72 0.183941
Target:  5'- cUGGGCGCGCCUGgUCGACacGuCCGGCa -3'
miRNA:   3'- uGCUUGCGCGGGCgAGCUGc-C-GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.