miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 53533 0.66 0.401504
Target:  5'- uCGAuguuCGCGCCCGCagUCGugaugaugaacaugaGCGGCUGcCg -3'
miRNA:   3'- uGCUu---GCGCGGGCG--AGC---------------UGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 17344 0.66 0.398
Target:  5'- gACGAuguuccuCGCgGCCgGCUgCGAuaacguccCGGCCGGCu -3'
miRNA:   3'- -UGCUu------GCG-CGGgCGA-GCU--------GCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 35547 0.66 0.398
Target:  5'- cGCG-ACGCGUCCGUUCaGAuCGGCguagGACu -3'
miRNA:   3'- -UGCuUGCGCGGGCGAG-CU-GCCGg---CUG- -5'
24860 5' -61.3 NC_005284.1 + 9694 0.66 0.398
Target:  5'- uGCG-AUGCaGUCgGCaUUGACGGCUGGCu -3'
miRNA:   3'- -UGCuUGCG-CGGgCG-AGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 46468 0.66 0.398
Target:  5'- cCGAGCguccgacgcugGCGUuagCUGCUCGugcAUGGCCGACg -3'
miRNA:   3'- uGCUUG-----------CGCG---GGCGAGC---UGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 1026 0.66 0.398
Target:  5'- gUGAA-GCGCUCGCcugaguugaUCGuuGCGGCUGACa -3'
miRNA:   3'- uGCUUgCGCGGGCG---------AGC--UGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 51749 0.67 0.392781
Target:  5'- cGCG-GCGCGCCUGCgggaagUGGaggcguuagcgguaGGCCGGCu -3'
miRNA:   3'- -UGCuUGCGCGGGCGa-----GCUg-------------CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 32026 0.67 0.392781
Target:  5'- gACGAucGCGCGCCC-CUUGAucgaccgcagccgcuCGGCCa-- -3'
miRNA:   3'- -UGCU--UGCGCGGGcGAGCU---------------GCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 47973 0.67 0.389327
Target:  5'- uGCGAAU-CGCCCcCUCGGCcucGCCGAUc -3'
miRNA:   3'- -UGCUUGcGCGGGcGAGCUGc--CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 7044 0.67 0.389327
Target:  5'- gACGuACGCGCgCCGC-CGuACcGCCGAg -3'
miRNA:   3'- -UGCuUGCGCG-GGCGaGC-UGcCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 22603 0.67 0.389327
Target:  5'- cGCGAAUGCGUacaucgagCgGCUCGAUuGGgCGACc -3'
miRNA:   3'- -UGCUUGCGCG--------GgCGAGCUG-CCgGCUG- -5'
24860 5' -61.3 NC_005284.1 + 16678 0.67 0.380778
Target:  5'- uCGAGCGUgagGCCgGCgUCGGCGugccGCUGACg -3'
miRNA:   3'- uGCUUGCG---CGGgCG-AGCUGC----CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 47781 0.67 0.380778
Target:  5'- uCGAgGCgGCGCUCGCggaggCGACGGgCGAg -3'
miRNA:   3'- uGCU-UG-CGCGGGCGa----GCUGCCgGCUg -5'
24860 5' -61.3 NC_005284.1 + 14621 0.67 0.378238
Target:  5'- cCGAACGCucGCgCGCuaccUCGAcgccgugaauuuucCGGCCGGCa -3'
miRNA:   3'- uGCUUGCG--CGgGCG----AGCU--------------GCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 25560 0.67 0.375709
Target:  5'- uUGAGCGUGCauucgaucccgccguCCGCgCGGCGguuGCCGACu -3'
miRNA:   3'- uGCUUGCGCG---------------GGCGaGCUGC---CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 21494 0.67 0.372355
Target:  5'- uUGGcCGCG-CUGCUuggcaUGGCGGCCGGCg -3'
miRNA:   3'- uGCUuGCGCgGGCGA-----GCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 24723 0.67 0.372355
Target:  5'- gGCGaAACGaCGCCCGUgCGucuuCGGCCcGCu -3'
miRNA:   3'- -UGC-UUGC-GCGGGCGaGCu---GCCGGcUG- -5'
24860 5' -61.3 NC_005284.1 + 9446 0.67 0.369853
Target:  5'- aACGAACGCGUUCGCcucuucaagugugaUCGGCGuGaCGAUa -3'
miRNA:   3'- -UGCUUGCGCGGGCG--------------AGCUGC-CgGCUG- -5'
24860 5' -61.3 NC_005284.1 + 23301 0.67 0.36406
Target:  5'- cCGAgGCGCGCaaugcgCGCUuuucCGGCGGCaCGGCg -3'
miRNA:   3'- uGCU-UGCGCGg-----GCGA----GCUGCCG-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 20631 0.67 0.36406
Target:  5'- -gGGACGCuGCUauacaaCGGCGGCCGACa -3'
miRNA:   3'- ugCUUGCG-CGGgcga--GCUGCCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.