miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 5283 0.67 0.355085
Target:  5'- uGCGAACgaauuccucgucgGCGCCUuCUCGAUGG-CGGCu -3'
miRNA:   3'- -UGCUUG-------------CGCGGGcGAGCUGCCgGCUG- -5'
24860 5' -61.3 NC_005284.1 + 37189 0.67 0.351057
Target:  5'- gACGAGCGCGaCCguguaacgcgucuugCGUUCG-CuGCCGACg -3'
miRNA:   3'- -UGCUUGCGC-GG---------------GCGAGCuGcCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 19495 0.67 0.347858
Target:  5'- cACGAACGCGUCgacuguagCGCaUgGACG-CCGACa -3'
miRNA:   3'- -UGCUUGCGCGG--------GCG-AgCUGCcGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 10164 0.68 0.343099
Target:  5'- cACGAugAUGCGCUCgguugguuccggcuuGCUggCGGCGGUCGGCg -3'
miRNA:   3'- -UGCU--UGCGCGGG---------------CGA--GCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 15190 0.68 0.339952
Target:  5'- cCGAccaguuCGCGCUCGCgUCGgaggacuacgcaGCGGCCGAa -3'
miRNA:   3'- uGCUu-----GCGCGGGCG-AGC------------UGCCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 10923 0.68 0.339952
Target:  5'- cGCGAaugauGCGCagGCCCGC---AUGGCCGGCc -3'
miRNA:   3'- -UGCU-----UGCG--CGGGCGagcUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 30371 0.68 0.332177
Target:  5'- cGCGAGgGCGaUgCGCUCGGCccgcgugugcuGGUCGGCa -3'
miRNA:   3'- -UGCUUgCGC-GgGCGAGCUG-----------CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 7493 0.68 0.332177
Target:  5'- aGCucGCGCGCguugaucaCGCggCGACGGCCGuCg -3'
miRNA:   3'- -UGcuUGCGCGg-------GCGa-GCUGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 47263 0.68 0.332177
Target:  5'- gACGGGCGagaacCUCGUgaUCGACGGCCGuCg -3'
miRNA:   3'- -UGCUUGCgc---GGGCG--AGCUGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 37049 0.68 0.324534
Target:  5'- cCGAGCcgguGCGCCUGCgccugCGACGugcaGCCGAa -3'
miRNA:   3'- uGCUUG----CGCGGGCGa----GCUGC----CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 51929 0.68 0.317022
Target:  5'- gACGcuCGCGCUCGUcuuauUCG-CGGCCGuCg -3'
miRNA:   3'- -UGCuuGCGCGGGCG-----AGCuGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 9304 0.68 0.312578
Target:  5'- gACGAugACGCGCCUGCa-GACGGagaucgucaaguauaUCGGCg -3'
miRNA:   3'- -UGCU--UGCGCGGGCGagCUGCC---------------GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 16757 0.69 0.295276
Target:  5'- uGCGGuGCGCGUgCGCuUCGGUGuGCCGGCg -3'
miRNA:   3'- -UGCU-UGCGCGgGCG-AGCUGC-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 4355 0.69 0.295276
Target:  5'- gGCGAGaagGCGCUCGCUgaagcaaaGAgGGCUGGCg -3'
miRNA:   3'- -UGCUUg--CGCGGGCGAg-------CUgCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 29256 0.69 0.295276
Target:  5'- -aGAGCGaCGCgCGCacgaCGACGGCCG-Cu -3'
miRNA:   3'- ugCUUGC-GCGgGCGa---GCUGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 23870 0.69 0.295276
Target:  5'- aGCGGccACgGCGCCCGCcCGAUGcaucCCGACu -3'
miRNA:   3'- -UGCU--UG-CGCGGGCGaGCUGCc---GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 30262 0.69 0.292466
Target:  5'- aGCGGGCGCGUUCGUUCGcugucgaguggcucGCgcgauacgguugaGGCCGGCu -3'
miRNA:   3'- -UGCUUGCGCGGGCGAGC--------------UG-------------CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 44559 0.69 0.288291
Target:  5'- aGCGAACGUGCuuGUgUCGAUcacguccuGGCgGACa -3'
miRNA:   3'- -UGCUUGCGCGggCG-AGCUG--------CCGgCUG- -5'
24860 5' -61.3 NC_005284.1 + 15954 0.69 0.288291
Target:  5'- cGCGcGACGCcgGCCCacGUUCGccguguucaACGGCCGGCg -3'
miRNA:   3'- -UGC-UUGCG--CGGG--CGAGC---------UGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 39496 0.69 0.284162
Target:  5'- aGCGGGCGCgGUUggucagugcauguggUGCUCGccGCGGCCGAUg -3'
miRNA:   3'- -UGCUUGCG-CGG---------------GCGAGC--UGCCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.