miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 39603 0.69 0.281435
Target:  5'- cGCGAGCGCGaaCUGgUCGGuCGGCaCGGCc -3'
miRNA:   3'- -UGCUUGCGCg-GGCgAGCU-GCCG-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 47806 0.69 0.280757
Target:  5'- uCGAGCGCGCCauguacgCGCgucaCGACGaaauacggcGCCGGCg -3'
miRNA:   3'- uGCUUGCGCGG-------GCGa---GCUGC---------CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 18479 0.69 0.280757
Target:  5'- cGCGGguGCGCGCCgagaacgCGCUCGGCGugacGUCGAUu -3'
miRNA:   3'- -UGCU--UGCGCGG-------GCGAGCUGC----CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 8877 0.69 0.274044
Target:  5'- aACGAcgugcugcgcaucGCGCGCgacacacggcaaCCGCUCGACGcgacaGCCGAg -3'
miRNA:   3'- -UGCU-------------UGCGCG------------GGCGAGCUGC-----CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 8312 0.69 0.268114
Target:  5'- cACGAGCagcuaacgccaGCGUCggaCGCUCGGCGGCauuCGGCg -3'
miRNA:   3'- -UGCUUG-----------CGCGG---GCGAGCUGCCG---GCUG- -5'
24860 5' -61.3 NC_005284.1 + 38209 0.69 0.261646
Target:  5'- aGCGAGC-CGUCCGCguucuggaUCGGCGuGCCGuCg -3'
miRNA:   3'- -UGCUUGcGCGGGCG--------AGCUGC-CGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 50525 0.69 0.255306
Target:  5'- uGCGAGuCGC-CgCCGCUCuuGCGGCCGAa -3'
miRNA:   3'- -UGCUU-GCGcG-GGCGAGc-UGCCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 7876 0.69 0.255306
Target:  5'- gGCGAAaagaucgcagUGCGCgaGC-CGACGGUCGGCg -3'
miRNA:   3'- -UGCUU----------GCGCGggCGaGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 9900 0.69 0.254053
Target:  5'- uCGAGCGCGCCgaagcguCGCUCGcgcucgcgcagcaGCGGCguaCGGCg -3'
miRNA:   3'- uGCUUGCGCGG-------GCGAGC-------------UGCCG---GCUG- -5'
24860 5' -61.3 NC_005284.1 + 7543 0.7 0.251563
Target:  5'- gACGAagggcaaaacauucuGCGUGCCgCGCgugCGACGGgCGAa -3'
miRNA:   3'- -UGCU---------------UGCGCGG-GCGa--GCUGCCgGCUg -5'
24860 5' -61.3 NC_005284.1 + 33224 0.7 0.248478
Target:  5'- uCGAACGCccgcgcgGCCUGCUCGuCGgcaaGCCGAUg -3'
miRNA:   3'- uGCUUGCG-------CGGGCGAGCuGC----CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 47721 0.7 0.243004
Target:  5'- cGCGuGCGCagaagGCCgUGCUCGGCGGUaCGGCg -3'
miRNA:   3'- -UGCuUGCG-----CGG-GCGAGCUGCCG-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 6698 0.7 0.243004
Target:  5'- aGCGAuAgGCGCUCGgaUGACcgGGCCGGCg -3'
miRNA:   3'- -UGCU-UgCGCGGGCgaGCUG--CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 44882 0.7 0.243004
Target:  5'- cGCGAGCGCGagcgaCGCuUCGGCGcGCUGAg -3'
miRNA:   3'- -UGCUUGCGCgg---GCG-AGCUGC-CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 44958 0.7 0.2312
Target:  5'- -aGGGCGUGCCCGUgaugCG-CGcGCCGAUu -3'
miRNA:   3'- ugCUUGCGCGGGCGa---GCuGC-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 8592 0.7 0.2312
Target:  5'- uACGAccgccgcauGCGCGgucuCUCG-UCGACGGCCGGCu -3'
miRNA:   3'- -UGCU---------UGCGC----GGGCgAGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 47420 0.7 0.225481
Target:  5'- gACGAACGCcagaucGgCCGCgUCGAgauCGGUCGACg -3'
miRNA:   3'- -UGCUUGCG------CgGGCG-AGCU---GCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 50102 0.7 0.219882
Target:  5'- uGCGGcgGCGCaaugaucCCCGCUUGACGGUccgCGACg -3'
miRNA:   3'- -UGCU--UGCGc------GGGCGAGCUGCCG---GCUG- -5'
24860 5' -61.3 NC_005284.1 + 16991 0.7 0.219882
Target:  5'- cCGAACGCGCacaCGg-CGACGaucGCCGACg -3'
miRNA:   3'- uGCUUGCGCGg--GCgaGCUGC---CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 11826 0.7 0.219329
Target:  5'- cGCGAGCGCGgCUaucucgagcagcgGCUCGcguuGCaGGCCGACu -3'
miRNA:   3'- -UGCUUGCGCgGG-------------CGAGC----UG-CCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.