miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 220 0.72 0.17467
Target:  5'- gGCGAcagucACGCGCCCuGCUUGcaaacAgGGCUGACa -3'
miRNA:   3'- -UGCU-----UGCGCGGG-CGAGC-----UgCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 327 0.66 0.405912
Target:  5'- gACGAuugcCGCGCaCCGCgucggacuuccauUUGACGGCCu-- -3'
miRNA:   3'- -UGCUu---GCGCG-GGCG-------------AGCUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 456 0.71 0.198664
Target:  5'- gGCGAGCcggcaGCGCCUGgUCGGCGcaaaGCCGAa -3'
miRNA:   3'- -UGCUUG-----CGCGGGCgAGCUGC----CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 1026 0.66 0.398
Target:  5'- gUGAA-GCGCUCGCcugaguugaUCGuuGCGGCUGACa -3'
miRNA:   3'- uGCUUgCGCGGGCG---------AGC--UGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 1274 0.66 0.423842
Target:  5'- cCGGGCGCGgaaaugaaaaagcCCCGCgCGGCGaaCCGGCg -3'
miRNA:   3'- uGCUUGCGC-------------GGGCGaGCUGCc-GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 1633 0.66 0.443169
Target:  5'- uCGAcaugGCGCGCaaGCUCGAuuugaacaguaUGGcCCGGCu -3'
miRNA:   3'- uGCU----UGCGCGggCGAGCU-----------GCC-GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 4172 0.74 0.133956
Target:  5'- gGCGAACGaCGUgaaucggCUGCUCGACGGCCu-- -3'
miRNA:   3'- -UGCUUGC-GCG-------GGCGAGCUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 4263 0.71 0.214403
Target:  5'- uCGAACuugGCCUGCuUCGGCGuGCCGACc -3'
miRNA:   3'- uGCUUGcg-CGGGCG-AGCUGC-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 4355 0.69 0.295276
Target:  5'- gGCGAGaagGCGCUCGCUgaagcaaaGAgGGCUGGCg -3'
miRNA:   3'- -UGCUUg--CGCGGGCGAg-------CUgCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 4618 0.78 0.064475
Target:  5'- cAUGAACGUGCCUGC--GACGGUCGGCa -3'
miRNA:   3'- -UGCUUGCGCGGGCGagCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 4916 0.71 0.197147
Target:  5'- gACG-AUGCGCCgGCacugcaaucguauaUCGACGGCCGuGCc -3'
miRNA:   3'- -UGCuUGCGCGGgCG--------------AGCUGCCGGC-UG- -5'
24860 5' -61.3 NC_005284.1 + 5283 0.67 0.355085
Target:  5'- uGCGAACgaauuccucgucgGCGCCUuCUCGAUGG-CGGCu -3'
miRNA:   3'- -UGCUUG-------------CGCGGGcGAGCUGCCgGCUG- -5'
24860 5' -61.3 NC_005284.1 + 5410 0.66 0.433903
Target:  5'- uGCG-GCGCGCCaGCUCG-CGcUCGGCg -3'
miRNA:   3'- -UGCuUGCGCGGgCGAGCuGCcGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 5504 0.66 0.415715
Target:  5'- aAUGGugGcCGCCCGCg-GGCGGUCa-- -3'
miRNA:   3'- -UGCUugC-GCGGGCGagCUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 6661 0.74 0.127345
Target:  5'- --aGACGCGCCgGguuuggCGACGGCCGGCg -3'
miRNA:   3'- ugcUUGCGCGGgCga----GCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 6698 0.7 0.243004
Target:  5'- aGCGAuAgGCGCUCGgaUGACcgGGCCGGCg -3'
miRNA:   3'- -UGCU-UgCGCGGGCgaGCUG--CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 6987 0.66 0.443169
Target:  5'- cGCGuacauGGCGCGCUcgacauggCGCUCGcCGGgCUGACu -3'
miRNA:   3'- -UGC-----UUGCGCGG--------GCGAGCuGCC-GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 7044 0.67 0.389327
Target:  5'- gACGuACGCGCgCCGC-CGuACcGCCGAg -3'
miRNA:   3'- -UGCuUGCGCG-GGCGaGC-UGcCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 7493 0.68 0.332177
Target:  5'- aGCucGCGCGCguugaucaCGCggCGACGGCCGuCg -3'
miRNA:   3'- -UGcuUGCGCGg-------GCGa-GCUGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 7543 0.7 0.251563
Target:  5'- gACGAagggcaaaacauucuGCGUGCCgCGCgugCGACGGgCGAa -3'
miRNA:   3'- -UGCU---------------UGCGCGG-GCGa--GCUGCCgGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.