miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 7876 0.69 0.255306
Target:  5'- gGCGAAaagaucgcagUGCGCgaGC-CGACGGUCGGCg -3'
miRNA:   3'- -UGCUU----------GCGCGggCGaGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 8312 0.69 0.268114
Target:  5'- cACGAGCagcuaacgccaGCGUCggaCGCUCGGCGGCauuCGGCg -3'
miRNA:   3'- -UGCUUG-----------CGCGG---GCGAGCUGCCG---GCUG- -5'
24860 5' -61.3 NC_005284.1 + 8592 0.7 0.2312
Target:  5'- uACGAccgccgcauGCGCGgucuCUCG-UCGACGGCCGGCu -3'
miRNA:   3'- -UGCU---------UGCGC----GGGCgAGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 8740 0.75 0.102699
Target:  5'- -gGAGCGCuugccgucgagGCCUGCUCGACGcCCGGCg -3'
miRNA:   3'- ugCUUGCG-----------CGGGCGAGCUGCcGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 8877 0.69 0.274044
Target:  5'- aACGAcgugcugcgcaucGCGCGCgacacacggcaaCCGCUCGACGcgacaGCCGAg -3'
miRNA:   3'- -UGCU-------------UGCGCG------------GGCGAGCUGC-----CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 9234 0.66 0.443169
Target:  5'- uCGAG-GCGCUgaCGCgcgCGGCGGgCGGCa -3'
miRNA:   3'- uGCUUgCGCGG--GCGa--GCUGCCgGCUG- -5'
24860 5' -61.3 NC_005284.1 + 9304 0.68 0.312578
Target:  5'- gACGAugACGCGCCUGCa-GACGGagaucgucaaguauaUCGGCg -3'
miRNA:   3'- -UGCU--UGCGCGGGCGagCUGCC---------------GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 9446 0.67 0.369853
Target:  5'- aACGAACGCGUUCGCcucuucaagugugaUCGGCGuGaCGAUa -3'
miRNA:   3'- -UGCUUGCGCGGGCG--------------AGCUGC-CgGCUG- -5'
24860 5' -61.3 NC_005284.1 + 9694 0.66 0.398
Target:  5'- uGCG-AUGCaGUCgGCaUUGACGGCUGGCu -3'
miRNA:   3'- -UGCuUGCG-CGGgCG-AGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 9717 0.66 0.406797
Target:  5'- cACGAGCGCguaGCCgCGCUCGcCcGCCcACg -3'
miRNA:   3'- -UGCUUGCG---CGG-GCGAGCuGcCGGcUG- -5'
24860 5' -61.3 NC_005284.1 + 9900 0.69 0.254053
Target:  5'- uCGAGCGCGCCgaagcguCGCUCGcgcucgcgcagcaGCGGCguaCGGCg -3'
miRNA:   3'- uGCUUGCGCGG-------GCGAGC-------------UGCCG---GCUG- -5'
24860 5' -61.3 NC_005284.1 + 10164 0.68 0.343099
Target:  5'- cACGAugAUGCGCUCgguugguuccggcuuGCUggCGGCGGUCGGCg -3'
miRNA:   3'- -UGCU--UGCGCGGG---------------CGA--GCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 10923 0.68 0.339952
Target:  5'- cGCGAaugauGCGCagGCCCGC---AUGGCCGGCc -3'
miRNA:   3'- -UGCU-----UGCG--CGGGCGagcUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 11826 0.7 0.219329
Target:  5'- cGCGAGCGCGgCUaucucgagcagcgGCUCGcguuGCaGGCCGACu -3'
miRNA:   3'- -UGCUUGCGCgGG-------------CGAGC----UG-CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 14621 0.67 0.378238
Target:  5'- cCGAACGCucGCgCGCuaccUCGAcgccgugaauuuucCGGCCGGCa -3'
miRNA:   3'- uGCUUGCG--CGgGCG----AGCU--------------GCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 14955 0.75 0.108403
Target:  5'- gGCGugaauAACGCGCgCCGUUCGGCGGCuuccugugCGACa -3'
miRNA:   3'- -UGC-----UUGCGCG-GGCGAGCUGCCG--------GCUG- -5'
24860 5' -61.3 NC_005284.1 + 15190 0.68 0.339952
Target:  5'- cCGAccaguuCGCGCUCGCgUCGgaggacuacgcaGCGGCCGAa -3'
miRNA:   3'- uGCUu-----GCGCGGGCG-AGC------------UGCCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 15724 0.66 0.415715
Target:  5'- gGCGucugucGACGCGCgCGgUguggggcggaaUGugGGCCGACa -3'
miRNA:   3'- -UGC------UUGCGCGgGCgA-----------GCugCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 15954 0.69 0.288291
Target:  5'- cGCGcGACGCcgGCCCacGUUCGccguguucaACGGCCGGCg -3'
miRNA:   3'- -UGC-UUGCG--CGGG--CGAGC---------UGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 16678 0.67 0.380778
Target:  5'- uCGAGCGUgagGCCgGCgUCGGCGugccGCUGACg -3'
miRNA:   3'- uGCUUGCG---CGGgCG-AGCUGC----CGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.