miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 16757 0.69 0.295276
Target:  5'- uGCGGuGCGCGUgCGCuUCGGUGuGCCGGCg -3'
miRNA:   3'- -UGCU-UGCGCGgGCG-AGCUGC-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 16991 0.7 0.219882
Target:  5'- cCGAACGCGCacaCGg-CGACGaucGCCGACg -3'
miRNA:   3'- uGCUUGCGCGg--GCgaGCUGC---CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 17344 0.66 0.398
Target:  5'- gACGAuguuccuCGCgGCCgGCUgCGAuaacguccCGGCCGGCu -3'
miRNA:   3'- -UGCUu------GCG-CGGgCGA-GCU--------GCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 17894 0.72 0.17467
Target:  5'- gGCGGGCGCaUCCGCgCaGCGGCUGGCg -3'
miRNA:   3'- -UGCUUGCGcGGGCGaGcUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 18119 0.66 0.431146
Target:  5'- aACGAAauucugagccCGCGCCCgGCUCuccccucggauaugGGCGGCCu-- -3'
miRNA:   3'- -UGCUU----------GCGCGGG-CGAG--------------CUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 18479 0.69 0.280757
Target:  5'- cGCGGguGCGCGCCgagaacgCGCUCGGCGugacGUCGAUu -3'
miRNA:   3'- -UGCU--UGCGCGG-------GCGAGCUGC----CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 18783 0.72 0.183941
Target:  5'- cUGGGCGCGCCUGgUCGACacGuCCGGCa -3'
miRNA:   3'- uGCUUGCGCGGGCgAGCUGc-C-GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 19495 0.67 0.347858
Target:  5'- cACGAACGCGUCgacuguagCGCaUgGACG-CCGACa -3'
miRNA:   3'- -UGCUUGCGCGG--------GCG-AgCUGCcGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 19715 0.76 0.092129
Target:  5'- gACGGagcgGCGCGCCUcauGCUCGACGGaaCGACa -3'
miRNA:   3'- -UGCU----UGCGCGGG---CGAGCUGCCg-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 20631 0.67 0.36406
Target:  5'- -gGGACGCuGCUauacaaCGGCGGCCGACa -3'
miRNA:   3'- ugCUUGCG-CGGgcga--GCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 20818 0.72 0.183941
Target:  5'- uCGAGCa-GCCCGCagcagCGcCGGCCGACg -3'
miRNA:   3'- uGCUUGcgCGGGCGa----GCuGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 21410 0.72 0.179252
Target:  5'- gGCGAGC-CGUCgGCagCGcCGGCCGACg -3'
miRNA:   3'- -UGCUUGcGCGGgCGa-GCuGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 21494 0.67 0.372355
Target:  5'- uUGGcCGCG-CUGCUuggcaUGGCGGCCGGCg -3'
miRNA:   3'- uGCUuGCGCgGGCGA-----GCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 21618 0.75 0.114404
Target:  5'- -aGAucucGCGCGCCgCGCUCGAC-GCCGAg -3'
miRNA:   3'- ugCU----UGCGCGG-GCGAGCUGcCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 21818 0.66 0.443169
Target:  5'- gGCGAcgGCGUGCCCggcGCUUccaGCGccGCCGGCg -3'
miRNA:   3'- -UGCU--UGCGCGGG---CGAGc--UGC--CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 22603 0.67 0.389327
Target:  5'- cGCGAAUGCGUacaucgagCgGCUCGAUuGGgCGACc -3'
miRNA:   3'- -UGCUUGCGCG--------GgCGAGCUG-CCgGCUG- -5'
24860 5' -61.3 NC_005284.1 + 23175 0.66 0.443169
Target:  5'- cGCG-GCGCGuUCCGCUCGugugAUGGCUG-Ca -3'
miRNA:   3'- -UGCuUGCGC-GGGCGAGC----UGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 23301 0.67 0.36406
Target:  5'- cCGAgGCGCGCaaugcgCGCUuuucCGGCGGCaCGGCg -3'
miRNA:   3'- uGCU-UGCGCGg-----GCGA----GCUGCCG-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 23870 0.69 0.295276
Target:  5'- aGCGGccACgGCGCCCGCcCGAUGcaucCCGACu -3'
miRNA:   3'- -UGCU--UG-CGCGGGCGaGCUGCc---GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 24082 0.72 0.183941
Target:  5'- gGCGAACGCGUCCauuaugcagagcGCgUCGGCaagaaagccgccGGCCGGCu -3'
miRNA:   3'- -UGCUUGCGCGGG------------CG-AGCUG------------CCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.