miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 53533 0.66 0.401504
Target:  5'- uCGAuguuCGCGCCCGCagUCGugaugaugaacaugaGCGGCUGcCg -3'
miRNA:   3'- uGCUu---GCGCGGGCG--AGC---------------UGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 51929 0.68 0.317022
Target:  5'- gACGcuCGCGCUCGUcuuauUCG-CGGCCGuCg -3'
miRNA:   3'- -UGCuuGCGCGGGCG-----AGCuGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 51749 0.67 0.392781
Target:  5'- cGCG-GCGCGCCUGCgggaagUGGaggcguuagcgguaGGCCGGCu -3'
miRNA:   3'- -UGCuUGCGCGGGCGa-----GCUg-------------CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 50525 0.69 0.255306
Target:  5'- uGCGAGuCGC-CgCCGCUCuuGCGGCCGAa -3'
miRNA:   3'- -UGCUU-GCGcG-GGCGAGc-UGCCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 50102 0.7 0.219882
Target:  5'- uGCGGcgGCGCaaugaucCCCGCUUGACGGUccgCGACg -3'
miRNA:   3'- -UGCU--UGCGc------GGGCGAGCUGCCG---GCUG- -5'
24860 5' -61.3 NC_005284.1 + 49159 0.66 0.415715
Target:  5'- gGCGGACGgGCCCgGCgaggCGAUGGagGAa -3'
miRNA:   3'- -UGCUUGCgCGGG-CGa---GCUGCCggCUg -5'
24860 5' -61.3 NC_005284.1 + 47973 0.67 0.389327
Target:  5'- uGCGAAU-CGCCCcCUCGGCcucGCCGAUc -3'
miRNA:   3'- -UGCUUGcGCGGGcGAGCUGc--CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 47907 0.71 0.193646
Target:  5'- cGCGAGCaGUuCCCGC-CGACGGCCa-- -3'
miRNA:   3'- -UGCUUG-CGcGGGCGaGCUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 47806 0.69 0.280757
Target:  5'- uCGAGCGCGCCauguacgCGCgucaCGACGaaauacggcGCCGGCg -3'
miRNA:   3'- uGCUUGCGCGG-------GCGa---GCUGC---------CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 47781 0.67 0.380778
Target:  5'- uCGAgGCgGCGCUCGCggaggCGACGGgCGAg -3'
miRNA:   3'- uGCU-UG-CGCGGGCGa----GCUGCCgGCUg -5'
24860 5' -61.3 NC_005284.1 + 47721 0.7 0.243004
Target:  5'- cGCGuGCGCagaagGCCgUGCUCGGCGGUaCGGCg -3'
miRNA:   3'- -UGCuUGCG-----CGG-GCGAGCUGCCG-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 47420 0.7 0.225481
Target:  5'- gACGAACGCcagaucGgCCGCgUCGAgauCGGUCGACg -3'
miRNA:   3'- -UGCUUGCG------CgGGCG-AGCU---GCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 47263 0.68 0.332177
Target:  5'- gACGGGCGagaacCUCGUgaUCGACGGCCGuCg -3'
miRNA:   3'- -UGCUUGCgc---GGGCG--AGCUGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 46808 0.66 0.427484
Target:  5'- gGCGGAuuucucgaccucuuUGCGCCCGguccgaucgaugaUCGAUGGCCG-Cg -3'
miRNA:   3'- -UGCUU--------------GCGCGGGCg------------AGCUGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 46468 0.66 0.398
Target:  5'- cCGAGCguccgacgcugGCGUuagCUGCUCGugcAUGGCCGACg -3'
miRNA:   3'- uGCUUG-----------CGCG---GGCGAGC---UGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 45436 0.66 0.415715
Target:  5'- cGCGcuCGCGCCCGUcgcuugaucCGACucGCCGAUa -3'
miRNA:   3'- -UGCuuGCGCGGGCGa--------GCUGc-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 45312 0.66 0.443169
Target:  5'- cCGAAUGCGCCUuaUCGucacGCCGAUc -3'
miRNA:   3'- uGCUUGCGCGGGcgAGCugc-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 44958 0.7 0.2312
Target:  5'- -aGGGCGUGCCCGUgaugCG-CGcGCCGAUu -3'
miRNA:   3'- ugCUUGCGCGGGCGa---GCuGC-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 44882 0.7 0.243004
Target:  5'- cGCGAGCGCGagcgaCGCuUCGGCGcGCUGAg -3'
miRNA:   3'- -UGCUUGCGCgg---GCG-AGCUGC-CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 44559 0.69 0.288291
Target:  5'- aGCGAACGUGCuuGUgUCGAUcacguccuGGCgGACa -3'
miRNA:   3'- -UGCUUGCGCGggCG-AGCUG--------CCGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.