miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 43825 0.74 0.123327
Target:  5'- aGCGAcuuguAUGCGUCCGCUCGuccggcgacgaGGCCGGCc -3'
miRNA:   3'- -UGCU-----UGCGCGGGCGAGCug---------CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 42027 0.66 0.433903
Target:  5'- cGCGAGCGCguGCCgGC-CGAgCGGCaugGAUa -3'
miRNA:   3'- -UGCUUGCG--CGGgCGaGCU-GCCGg--CUG- -5'
24860 5' -61.3 NC_005284.1 + 40168 0.66 0.446907
Target:  5'- uCGAgguaGCGCGCgagCGUUCGGCGccggaacacuuucgcGCCGACg -3'
miRNA:   3'- uGCU----UGCGCGg--GCGAGCUGC---------------CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 39603 0.69 0.281435
Target:  5'- cGCGAGCGCGaaCUGgUCGGuCGGCaCGGCc -3'
miRNA:   3'- -UGCUUGCGCg-GGCgAGCU-GCCG-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 39496 0.69 0.284162
Target:  5'- aGCGGGCGCgGUUggucagugcauguggUGCUCGccGCGGCCGAUg -3'
miRNA:   3'- -UGCUUGCG-CGG---------------GCGAGC--UGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 39480 0.71 0.202244
Target:  5'- cGCGAugccGCuGCGCCCGCacaucgugcgguccUCGuCGGUCGGCu -3'
miRNA:   3'- -UGCU----UG-CGCGGGCG--------------AGCuGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 38896 0.66 0.406797
Target:  5'- cCGAuagcGCGCGCaCCGcCUCuGCGG-CGACg -3'
miRNA:   3'- uGCU----UGCGCG-GGC-GAGcUGCCgGCUG- -5'
24860 5' -61.3 NC_005284.1 + 38834 0.72 0.179252
Target:  5'- gGCGAACGUgagGCCgGCgUCG-CGcGCCGACg -3'
miRNA:   3'- -UGCUUGCG---CGGgCG-AGCuGC-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 38603 0.66 0.424751
Target:  5'- cACGAuGC-CGCCCaGCgccaUCGACGcGCCGAg -3'
miRNA:   3'- -UGCU-UGcGCGGG-CG----AGCUGC-CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 38209 0.69 0.261646
Target:  5'- aGCGAGC-CGUCCGCguucuggaUCGGCGuGCCGuCg -3'
miRNA:   3'- -UGCUUGcGCGGGCG--------AGCUGC-CGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 38109 0.76 0.09467
Target:  5'- cACGccGACGCcgGCCucaCGCUCGACGGCCGGa -3'
miRNA:   3'- -UGC--UUGCG--CGG---GCGAGCUGCCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 37189 0.67 0.351057
Target:  5'- gACGAGCGCGaCCguguaacgcgucuugCGUUCG-CuGCCGACg -3'
miRNA:   3'- -UGCUUGCGC-GG---------------GCGAGCuGcCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 37049 0.68 0.324534
Target:  5'- cCGAGCcgguGCGCCUGCgccugCGACGugcaGCCGAa -3'
miRNA:   3'- uGCUUG----CGCGGGCGa----GCUGC----CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 36904 0.84 0.023528
Target:  5'- cGCGGAUGCGCCCGC-CGAUccggGGCCGGCc -3'
miRNA:   3'- -UGCUUGCGCGGGCGaGCUG----CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 35547 0.66 0.398
Target:  5'- cGCG-ACGCGUCCGUUCaGAuCGGCguagGACu -3'
miRNA:   3'- -UGCuUGCGCGGGCGAG-CU-GCCGg---CUG- -5'
24860 5' -61.3 NC_005284.1 + 33946 0.88 0.011582
Target:  5'- uGCGGaaGCGcCGCCCGCUCGuCGGCCGGCg -3'
miRNA:   3'- -UGCU--UGC-GCGGGCGAGCuGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 33356 0.83 0.029486
Target:  5'- uCGAACGacacCGCCCGUUCGuCGGCCGGCg -3'
miRNA:   3'- uGCUUGC----GCGGGCGAGCuGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 33224 0.7 0.248478
Target:  5'- uCGAACGCccgcgcgGCCUGCUCGuCGgcaaGCCGAUg -3'
miRNA:   3'- uGCUUGCG-------CGGGCGAGCuGC----CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 32026 0.67 0.392781
Target:  5'- gACGAucGCGCGCCC-CUUGAucgaccgcagccgcuCGGCCa-- -3'
miRNA:   3'- -UGCU--UGCGCGGGcGAGCU---------------GCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 31433 0.73 0.14931
Target:  5'- gGCG-ACGUGCgCCGCUgCGGCGcGCCGGg -3'
miRNA:   3'- -UGCuUGCGCG-GGCGA-GCUGC-CGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.