miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 7876 0.69 0.255306
Target:  5'- gGCGAAaagaucgcagUGCGCgaGC-CGACGGUCGGCg -3'
miRNA:   3'- -UGCUU----------GCGCGggCGaGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 4916 0.71 0.197147
Target:  5'- gACG-AUGCGCCgGCacugcaaucguauaUCGACGGCCGuGCc -3'
miRNA:   3'- -UGCuUGCGCGGgCG--------------AGCUGCCGGC-UG- -5'
24860 5' -61.3 NC_005284.1 + 456 0.71 0.198664
Target:  5'- gGCGAGCcggcaGCGCCUGgUCGGCGcaaaGCCGAa -3'
miRNA:   3'- -UGCUUG-----CGCGGGCgAGCUGC----CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 11826 0.7 0.219329
Target:  5'- cGCGAGCGCGgCUaucucgagcagcgGCUCGcguuGCaGGCCGACu -3'
miRNA:   3'- -UGCUUGCGCgGG-------------CGAGC----UG-CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 16991 0.7 0.219882
Target:  5'- cCGAACGCGCacaCGg-CGACGaucGCCGACg -3'
miRNA:   3'- uGCUUGCGCGg--GCgaGCUGC---CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 8592 0.7 0.2312
Target:  5'- uACGAccgccgcauGCGCGgucuCUCG-UCGACGGCCGGCu -3'
miRNA:   3'- -UGCU---------UGCGC----GGGCgAGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 47721 0.7 0.243004
Target:  5'- cGCGuGCGCagaagGCCgUGCUCGGCGGUaCGGCg -3'
miRNA:   3'- -UGCuUGCG-----CGG-GCGAGCUGCCG-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 7543 0.7 0.251563
Target:  5'- gACGAagggcaaaacauucuGCGUGCCgCGCgugCGACGGgCGAa -3'
miRNA:   3'- -UGCU---------------UGCGCGG-GCGa--GCUGCCgGCUg -5'
24860 5' -61.3 NC_005284.1 + 9900 0.69 0.254053
Target:  5'- uCGAGCGCGCCgaagcguCGCUCGcgcucgcgcagcaGCGGCguaCGGCg -3'
miRNA:   3'- uGCUUGCGCGG-------GCGAGC-------------UGCCG---GCUG- -5'
24860 5' -61.3 NC_005284.1 + 47907 0.71 0.193646
Target:  5'- cGCGAGCaGUuCCCGC-CGACGGCCa-- -3'
miRNA:   3'- -UGCUUG-CGcGGGCGaGCUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 18783 0.72 0.183941
Target:  5'- cUGGGCGCGCCUGgUCGACacGuCCGGCa -3'
miRNA:   3'- uGCUUGCGCGGGCgAGCUGc-C-GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 17894 0.72 0.17467
Target:  5'- gGCGGGCGCaUCCGCgCaGCGGCUGGCg -3'
miRNA:   3'- -UGCUUGCGcGGGCGaGcUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 33356 0.83 0.029486
Target:  5'- uCGAACGacacCGCCCGUUCGuCGGCCGGCg -3'
miRNA:   3'- uGCUUGC----GCGGGCGAGCuGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 4618 0.78 0.064475
Target:  5'- cAUGAACGUGCCUGC--GACGGUCGGCa -3'
miRNA:   3'- -UGCUUGCGCGGGCGagCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 19715 0.76 0.092129
Target:  5'- gACGGagcgGCGCGCCUcauGCUCGACGGaaCGACa -3'
miRNA:   3'- -UGCU----UGCGCGGG---CGAGCUGCCg-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 14955 0.75 0.108403
Target:  5'- gGCGugaauAACGCGCgCCGUUCGGCGGCuuccugugCGACa -3'
miRNA:   3'- -UGC-----UUGCGCG-GGCGAGCUGCCG--------GCUG- -5'
24860 5' -61.3 NC_005284.1 + 21618 0.75 0.114404
Target:  5'- -aGAucucGCGCGCCgCGCUCGAC-GCCGAg -3'
miRNA:   3'- ugCU----UGCGCGG-GCGAGCUGcCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 6661 0.74 0.127345
Target:  5'- --aGACGCGCCgGguuuggCGACGGCCGGCg -3'
miRNA:   3'- ugcUUGCGCGGgCga----GCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 4172 0.74 0.133956
Target:  5'- gGCGAACGaCGUgaaucggCUGCUCGACGGCCu-- -3'
miRNA:   3'- -UGCUUGC-GCG-------GGCGAGCUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 31433 0.73 0.14931
Target:  5'- gGCG-ACGUGCgCCGCUgCGGCGcGCCGGg -3'
miRNA:   3'- -UGCuUGCGCG-GGCGA-GCUGC-CGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.