miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 19715 0.76 0.092129
Target:  5'- gACGGagcgGCGCGCCUcauGCUCGACGGaaCGACa -3'
miRNA:   3'- -UGCU----UGCGCGGG---CGAGCUGCCg-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 4618 0.78 0.064475
Target:  5'- cAUGAACGUGCCUGC--GACGGUCGGCa -3'
miRNA:   3'- -UGCUUGCGCGGGCGagCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 33356 0.83 0.029486
Target:  5'- uCGAACGacacCGCCCGUUCGuCGGCCGGCg -3'
miRNA:   3'- uGCUUGC----GCGGGCGAGCuGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 33946 0.88 0.011582
Target:  5'- uGCGGaaGCGcCGCCCGCUCGuCGGCCGGCg -3'
miRNA:   3'- -UGCU--UGC-GCGGGCGAGCuGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 456 0.71 0.198664
Target:  5'- gGCGAGCcggcaGCGCCUGgUCGGCGcaaaGCCGAa -3'
miRNA:   3'- -UGCUUG-----CGCGGGCgAGCUGC----CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 11826 0.7 0.219329
Target:  5'- cGCGAGCGCGgCUaucucgagcagcgGCUCGcguuGCaGGCCGACu -3'
miRNA:   3'- -UGCUUGCGCgGG-------------CGAGC----UG-CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 16757 0.69 0.295276
Target:  5'- uGCGGuGCGCGUgCGCuUCGGUGuGCCGGCg -3'
miRNA:   3'- -UGCU-UGCGCGgGCG-AGCUGC-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 30262 0.69 0.292466
Target:  5'- aGCGGGCGCGUUCGUUCGcugucgaguggcucGCgcgauacgguugaGGCCGGCu -3'
miRNA:   3'- -UGCUUGCGCGGGCGAGC--------------UG-------------CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 44559 0.69 0.288291
Target:  5'- aGCGAACGUGCuuGUgUCGAUcacguccuGGCgGACa -3'
miRNA:   3'- -UGCUUGCGCGggCG-AGCUG--------CCGgCUG- -5'
24860 5' -61.3 NC_005284.1 + 15954 0.69 0.288291
Target:  5'- cGCGcGACGCcgGCCCacGUUCGccguguucaACGGCCGGCg -3'
miRNA:   3'- -UGC-UUGCG--CGGG--CGAGC---------UGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 39496 0.69 0.284162
Target:  5'- aGCGGGCGCgGUUggucagugcauguggUGCUCGccGCGGCCGAUg -3'
miRNA:   3'- -UGCUUGCG-CGG---------------GCGAGC--UGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 18479 0.69 0.280757
Target:  5'- cGCGGguGCGCGCCgagaacgCGCUCGGCGugacGUCGAUu -3'
miRNA:   3'- -UGCU--UGCGCGG-------GCGAGCUGC----CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 8877 0.69 0.274044
Target:  5'- aACGAcgugcugcgcaucGCGCGCgacacacggcaaCCGCUCGACGcgacaGCCGAg -3'
miRNA:   3'- -UGCU-------------UGCGCG------------GGCGAGCUGC-----CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 7876 0.69 0.255306
Target:  5'- gGCGAAaagaucgcagUGCGCgaGC-CGACGGUCGGCg -3'
miRNA:   3'- -UGCUU----------GCGCGggCGaGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 9900 0.69 0.254053
Target:  5'- uCGAGCGCGCCgaagcguCGCUCGcgcucgcgcagcaGCGGCguaCGGCg -3'
miRNA:   3'- uGCUUGCGCGG-------GCGAGC-------------UGCCG---GCUG- -5'
24860 5' -61.3 NC_005284.1 + 7543 0.7 0.251563
Target:  5'- gACGAagggcaaaacauucuGCGUGCCgCGCgugCGACGGgCGAa -3'
miRNA:   3'- -UGCU---------------UGCGCGG-GCGa--GCUGCCgGCUg -5'
24860 5' -61.3 NC_005284.1 + 47721 0.7 0.243004
Target:  5'- cGCGuGCGCagaagGCCgUGCUCGGCGGUaCGGCg -3'
miRNA:   3'- -UGCuUGCG-----CGG-GCGAGCUGCCG-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 8592 0.7 0.2312
Target:  5'- uACGAccgccgcauGCGCGgucuCUCG-UCGACGGCCGGCu -3'
miRNA:   3'- -UGCU---------UGCGC----GGGCgAGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 16991 0.7 0.219882
Target:  5'- cCGAACGCGCacaCGg-CGACGaucGCCGACg -3'
miRNA:   3'- uGCUUGCGCGg--GCgaGCUGC---CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 24535 1.08 0.000346
Target:  5'- aACGAACGCGCCCGCUCGACGGCCGACu -3'
miRNA:   3'- -UGCUUGCGCGGGCGAGCUGCCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.