miRNA display CGI


Results 1 - 20 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 40168 0.66 0.446907
Target:  5'- uCGAgguaGCGCGCgagCGUUCGGCGccggaacacuuucgcGCCGACg -3'
miRNA:   3'- uGCU----UGCGCGg--GCGAGCUGC---------------CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 37189 0.67 0.351057
Target:  5'- gACGAGCGCGaCCguguaacgcgucuugCGUUCG-CuGCCGACg -3'
miRNA:   3'- -UGCUUGCGC-GG---------------GCGAGCuGcCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 7493 0.68 0.332177
Target:  5'- aGCucGCGCGCguugaucaCGCggCGACGGCCGuCg -3'
miRNA:   3'- -UGcuUGCGCGg-------GCGa-GCUGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 24535 1.08 0.000346
Target:  5'- aACGAACGCGCCCGCUCGACGGCCGACu -3'
miRNA:   3'- -UGCUUGCGCGGGCGAGCUGCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 1274 0.66 0.423842
Target:  5'- cCGGGCGCGgaaaugaaaaagcCCCGCgCGGCGaaCCGGCg -3'
miRNA:   3'- uGCUUGCGC-------------GGGCGaGCUGCc-GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 45436 0.66 0.415715
Target:  5'- cGCGcuCGCGCCCGUcgcuugaucCGACucGCCGAUa -3'
miRNA:   3'- -UGCuuGCGCGGGCGa--------GCUGc-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 9717 0.66 0.406797
Target:  5'- cACGAGCGCguaGCCgCGCUCGcCcGCCcACg -3'
miRNA:   3'- -UGCUUGCG---CGG-GCGAGCuGcCGGcUG- -5'
24860 5' -61.3 NC_005284.1 + 327 0.66 0.405912
Target:  5'- gACGAuugcCGCGCaCCGCgucggacuuccauUUGACGGCCu-- -3'
miRNA:   3'- -UGCUu---GCGCG-GGCG-------------AGCUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 35547 0.66 0.398
Target:  5'- cGCG-ACGCGUCCGUUCaGAuCGGCguagGACu -3'
miRNA:   3'- -UGCuUGCGCGGGCGAG-CU-GCCGg---CUG- -5'
24860 5' -61.3 NC_005284.1 + 23301 0.67 0.36406
Target:  5'- cCGAgGCGCGCaaugcgCGCUuuucCGGCGGCaCGGCg -3'
miRNA:   3'- uGCU-UGCGCGg-----GCGA----GCUGCCG-GCUG- -5'
24860 5' -61.3 NC_005284.1 + 7044 0.67 0.389327
Target:  5'- gACGuACGCGCgCCGC-CGuACcGCCGAg -3'
miRNA:   3'- -UGCuUGCGCG-GGCGaGC-UGcCGGCUg -5'
24860 5' -61.3 NC_005284.1 + 17344 0.66 0.398
Target:  5'- gACGAuguuccuCGCgGCCgGCUgCGAuaacguccCGGCCGGCu -3'
miRNA:   3'- -UGCUu------GCG-CGGgCGA-GCU--------GCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 5410 0.66 0.433903
Target:  5'- uGCG-GCGCGCCaGCUCG-CGcUCGGCg -3'
miRNA:   3'- -UGCuUGCGCGGgCGAGCuGCcGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 47973 0.67 0.389327
Target:  5'- uGCGAAU-CGCCCcCUCGGCcucGCCGAUc -3'
miRNA:   3'- -UGCUUGcGCGGGcGAGCUGc--CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 18119 0.66 0.431146
Target:  5'- aACGAAauucugagccCGCGCCCgGCUCuccccucggauaugGGCGGCCu-- -3'
miRNA:   3'- -UGCUU----------GCGCGGG-CGAG--------------CUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 53533 0.66 0.401504
Target:  5'- uCGAuguuCGCGCCCGCagUCGugaugaugaacaugaGCGGCUGcCg -3'
miRNA:   3'- uGCUu---GCGCGGGCG--AGC---------------UGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 9446 0.67 0.369853
Target:  5'- aACGAACGCGUUCGCcucuucaagugugaUCGGCGuGaCGAUa -3'
miRNA:   3'- -UGCUUGCGCGGGCG--------------AGCUGC-CgGCUG- -5'
24860 5' -61.3 NC_005284.1 + 19495 0.67 0.347858
Target:  5'- cACGAACGCGUCgacuguagCGCaUgGACG-CCGACa -3'
miRNA:   3'- -UGCUUGCGCGG--------GCG-AgCUGCcGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 38603 0.66 0.424751
Target:  5'- cACGAuGC-CGCCCaGCgccaUCGACGcGCCGAg -3'
miRNA:   3'- -UGCU-UGcGCGGG-CG----AGCUGC-CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 38896 0.66 0.406797
Target:  5'- cCGAuagcGCGCGCaCCGcCUCuGCGG-CGACg -3'
miRNA:   3'- uGCU----UGCGCG-GGC-GAGcUGCCgGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.