miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24860 5' -61.3 NC_005284.1 + 29256 0.69 0.295276
Target:  5'- -aGAGCGaCGCgCGCacgaCGACGGCCG-Cu -3'
miRNA:   3'- ugCUUGC-GCGgGCGa---GCUGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 7493 0.68 0.332177
Target:  5'- aGCucGCGCGCguugaucaCGCggCGACGGCCGuCg -3'
miRNA:   3'- -UGcuUGCGCGg-------GCGa-GCUGCCGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 17344 0.66 0.398
Target:  5'- gACGAuguuccuCGCgGCCgGCUgCGAuaacguccCGGCCGGCu -3'
miRNA:   3'- -UGCUu------GCG-CGGgCGA-GCU--------GCCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 38603 0.66 0.424751
Target:  5'- cACGAuGC-CGCCCaGCgccaUCGACGcGCCGAg -3'
miRNA:   3'- -UGCU-UGcGCGGG-CG----AGCUGC-CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 50102 0.7 0.219882
Target:  5'- uGCGGcgGCGCaaugaucCCCGCUUGACGGUccgCGACg -3'
miRNA:   3'- -UGCU--UGCGc------GGGCGAGCUGCCG---GCUG- -5'
24860 5' -61.3 NC_005284.1 + 38209 0.69 0.261646
Target:  5'- aGCGAGC-CGUCCGCguucuggaUCGGCGuGCCGuCg -3'
miRNA:   3'- -UGCUUGcGCGGGCG--------AGCUGC-CGGCuG- -5'
24860 5' -61.3 NC_005284.1 + 37189 0.67 0.351057
Target:  5'- gACGAGCGCGaCCguguaacgcgucuugCGUUCG-CuGCCGACg -3'
miRNA:   3'- -UGCUUGCGC-GG---------------GCGAGCuGcCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 18119 0.66 0.431146
Target:  5'- aACGAAauucugagccCGCGCCCgGCUCuccccucggauaugGGCGGCCu-- -3'
miRNA:   3'- -UGCUU----------GCGCGGG-CGAG--------------CUGCCGGcug -5'
24860 5' -61.3 NC_005284.1 + 8312 0.69 0.268114
Target:  5'- cACGAGCagcuaacgccaGCGUCggaCGCUCGGCGGCauuCGGCg -3'
miRNA:   3'- -UGCUUG-----------CGCGG---GCGAGCUGCCG---GCUG- -5'
24860 5' -61.3 NC_005284.1 + 5410 0.66 0.433903
Target:  5'- uGCG-GCGCGCCaGCUCG-CGcUCGGCg -3'
miRNA:   3'- -UGCuUGCGCGGgCGAGCuGCcGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 19495 0.67 0.347858
Target:  5'- cACGAACGCGUCgacuguagCGCaUgGACG-CCGACa -3'
miRNA:   3'- -UGCUUGCGCGG--------GCG-AgCUGCcGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 23870 0.69 0.295276
Target:  5'- aGCGGccACgGCGCCCGCcCGAUGcaucCCGACu -3'
miRNA:   3'- -UGCU--UG-CGCGGGCGaGCUGCc---GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 47973 0.67 0.389327
Target:  5'- uGCGAAU-CGCCCcCUCGGCcucGCCGAUc -3'
miRNA:   3'- -UGCUUGcGCGGGcGAGCUGc--CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 35547 0.66 0.398
Target:  5'- cGCG-ACGCGUCCGUUCaGAuCGGCguagGACu -3'
miRNA:   3'- -UGCuUGCGCGGGCGAG-CU-GCCGg---CUG- -5'
24860 5' -61.3 NC_005284.1 + 9717 0.66 0.406797
Target:  5'- cACGAGCGCguaGCCgCGCUCGcCcGCCcACg -3'
miRNA:   3'- -UGCUUGCG---CGG-GCGAGCuGcCGGcUG- -5'
24860 5' -61.3 NC_005284.1 + 1274 0.66 0.423842
Target:  5'- cCGGGCGCGgaaaugaaaaagcCCCGCgCGGCGaaCCGGCg -3'
miRNA:   3'- uGCUUGCGC-------------GGGCGaGCUGCc-GGCUG- -5'
24860 5' -61.3 NC_005284.1 + 24082 0.72 0.183941
Target:  5'- gGCGAACGCGUCCauuaugcagagcGCgUCGGCaagaaagccgccGGCCGGCu -3'
miRNA:   3'- -UGCUUGCGCGGG------------CG-AGCUG------------CCGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 4263 0.71 0.214403
Target:  5'- uCGAACuugGCCUGCuUCGGCGuGCCGACc -3'
miRNA:   3'- uGCUUGcg-CGGGCG-AGCUGC-CGGCUG- -5'
24860 5' -61.3 NC_005284.1 + 44882 0.7 0.243004
Target:  5'- cGCGAGCGCGagcgaCGCuUCGGCGcGCUGAg -3'
miRNA:   3'- -UGCUUGCGCgg---GCG-AGCUGC-CGGCUg -5'
24860 5' -61.3 NC_005284.1 + 50525 0.69 0.255306
Target:  5'- uGCGAGuCGC-CgCCGCUCuuGCGGCCGAa -3'
miRNA:   3'- -UGCUU-GCGcG-GGCGAGc-UGCCGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.