miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 9939 0.66 0.927873
Target:  5'- gGCGUACGGcgCuugaGGCGGCa-GCGAAGCa -3'
miRNA:   3'- -CGUGUGCUuaG----CCGCUGagCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 371 0.66 0.927292
Target:  5'- uGCGCAUGuuGAUCGcaguGCGACuuaccauUCGCGAcgAGCg -3'
miRNA:   3'- -CGUGUGC--UUAGC----CGCUG-------AGCGCU--UUG- -5'
24861 3' -51.2 NC_005284.1 + 8560 0.66 0.927292
Target:  5'- cGCAucccaccCGCG-GUCGGCcaguucucccacGACUCGgGAGGCu -3'
miRNA:   3'- -CGU-------GUGCuUAGCCG------------CUGAGCgCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 14535 0.66 0.921932
Target:  5'- aCGCuGCGggUgGGCGACaUCaaCGGAACg -3'
miRNA:   3'- cGUG-UGCuuAgCCGCUG-AGc-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 28138 0.66 0.921932
Target:  5'- cCGCACGG--UGGCGGgcuucCUCGCGAu-- -3'
miRNA:   3'- cGUGUGCUuaGCCGCU-----GAGCGCUuug -5'
24861 3' -51.2 NC_005284.1 + 39355 0.66 0.920709
Target:  5'- uGCACgccauggACGAAcUGGCGGCcgacuagUCGCGcGACg -3'
miRNA:   3'- -CGUG-------UGCUUaGCCGCUG-------AGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 6998 0.66 0.915702
Target:  5'- cGCGCuCGAcaUGGCG-CUCGCcGGGCu -3'
miRNA:   3'- -CGUGuGCUuaGCCGCuGAGCGcUUUG- -5'
24861 3' -51.2 NC_005284.1 + 9903 0.66 0.915702
Target:  5'- aGCGCGcCGAagcGUCGcucGCG-CUCGCGcAGCa -3'
miRNA:   3'- -CGUGU-GCU---UAGC---CGCuGAGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 33126 0.66 0.915702
Target:  5'- cCGC-CGAcgCGGCGGCaUCGUGcgcGGCg -3'
miRNA:   3'- cGUGuGCUuaGCCGCUG-AGCGCu--UUG- -5'
24861 3' -51.2 NC_005284.1 + 29265 0.66 0.915702
Target:  5'- cGCGCACGAcgaCGGCcGCUC-CGAu-- -3'
miRNA:   3'- -CGUGUGCUua-GCCGcUGAGcGCUuug -5'
24861 3' -51.2 NC_005284.1 + 7497 0.66 0.915702
Target:  5'- cGCGCGCGuugaucacgCGGCGACggcCGuCGAucACg -3'
miRNA:   3'- -CGUGUGCuua------GCCGCUGa--GC-GCUu-UG- -5'
24861 3' -51.2 NC_005284.1 + 11068 0.66 0.909186
Target:  5'- cGCugAUGAAUCaGCaGAUgguggUCGCGAAGg -3'
miRNA:   3'- -CGugUGCUUAGcCG-CUG-----AGCGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 30264 0.66 0.909186
Target:  5'- cGgGCGCGuucguucgcuGUCGaGUGGCUCGCGcGAUa -3'
miRNA:   3'- -CgUGUGCu---------UAGC-CGCUGAGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 22854 0.66 0.909186
Target:  5'- aGUACACGAua-GGCGGCgggaagggCGUcGAGCg -3'
miRNA:   3'- -CGUGUGCUuagCCGCUGa-------GCGcUUUG- -5'
24861 3' -51.2 NC_005284.1 + 48718 0.66 0.909186
Target:  5'- cCGCuCGGAaguUCGGUGacGCUCGCGGAc- -3'
miRNA:   3'- cGUGuGCUU---AGCCGC--UGAGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 42824 0.66 0.908518
Target:  5'- -gACACGAGugcauccUCGGCa--UUGCGGAACg -3'
miRNA:   3'- cgUGUGCUU-------AGCCGcugAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 13385 0.66 0.902385
Target:  5'- aUACAUGcGUCaguaGCcACUCGCGAAACa -3'
miRNA:   3'- cGUGUGCuUAGc---CGcUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 16996 0.66 0.902385
Target:  5'- cGCGCACa---CGGCGACgaUCGcCGAcGCg -3'
miRNA:   3'- -CGUGUGcuuaGCCGCUG--AGC-GCUuUG- -5'
24861 3' -51.2 NC_005284.1 + 8894 0.66 0.902385
Target:  5'- cGCGCGCGAcacaCGGCaaccGCUCGaCGcGACa -3'
miRNA:   3'- -CGUGUGCUua--GCCGc---UGAGC-GCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 41801 0.66 0.902385
Target:  5'- uUAUGCGuccGAUCGGUGGCaUCGUGAuuGGCg -3'
miRNA:   3'- cGUGUGC---UUAGCCGCUG-AGCGCU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.