Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 9939 | 0.66 | 0.927873 |
Target: 5'- gGCGUACGGcgCuugaGGCGGCa-GCGAAGCa -3' miRNA: 3'- -CGUGUGCUuaG----CCGCUGagCGCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 14535 | 0.66 | 0.921932 |
Target: 5'- aCGCuGCGggUgGGCGACaUCaaCGGAACg -3' miRNA: 3'- cGUG-UGCuuAgCCGCUG-AGc-GCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 9903 | 0.66 | 0.915702 |
Target: 5'- aGCGCGcCGAagcGUCGcucGCG-CUCGCGcAGCa -3' miRNA: 3'- -CGUGU-GCU---UAGC---CGCuGAGCGCuUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 30264 | 0.66 | 0.909186 |
Target: 5'- cGgGCGCGuucguucgcuGUCGaGUGGCUCGCGcGAUa -3' miRNA: 3'- -CgUGUGCu---------UAGC-CGCUGAGCGCuUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 371 | 0.66 | 0.927292 |
Target: 5'- uGCGCAUGuuGAUCGcaguGCGACuuaccauUCGCGAcgAGCg -3' miRNA: 3'- -CGUGUGC--UUAGC----CGCUG-------AGCGCU--UUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 11068 | 0.66 | 0.909186 |
Target: 5'- cGCugAUGAAUCaGCaGAUgguggUCGCGAAGg -3' miRNA: 3'- -CGugUGCUUAGcCG-CUG-----AGCGCUUUg -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 8560 | 0.66 | 0.927292 |
Target: 5'- cGCAucccaccCGCG-GUCGGCcaguucucccacGACUCGgGAGGCu -3' miRNA: 3'- -CGU-------GUGCuUAGCCG------------CUGAGCgCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 29265 | 0.66 | 0.915702 |
Target: 5'- cGCGCACGAcgaCGGCcGCUC-CGAu-- -3' miRNA: 3'- -CGUGUGCUua-GCCGcUGAGcGCUuug -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 28138 | 0.66 | 0.921932 |
Target: 5'- cCGCACGG--UGGCGGgcuucCUCGCGAu-- -3' miRNA: 3'- cGUGUGCUuaGCCGCU-----GAGCGCUuug -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 6998 | 0.66 | 0.915702 |
Target: 5'- cGCGCuCGAcaUGGCG-CUCGCcGGGCu -3' miRNA: 3'- -CGUGuGCUuaGCCGCuGAGCGcUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 41801 | 0.66 | 0.902385 |
Target: 5'- uUAUGCGuccGAUCGGUGGCaUCGUGAuuGGCg -3' miRNA: 3'- cGUGUGC---UUAGCCGCUG-AGCGCU--UUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 17884 | 0.66 | 0.895302 |
Target: 5'- cCGC-CGGAUCGGCGgGCgcaucCGCGcAGCg -3' miRNA: 3'- cGUGuGCUUAGCCGC-UGa----GCGCuUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 39355 | 0.66 | 0.920709 |
Target: 5'- uGCACgccauggACGAAcUGGCGGCcgacuagUCGCGcGACg -3' miRNA: 3'- -CGUG-------UGCUUaGCCGCUG-------AGCGCuUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 9336 | 0.66 | 0.895302 |
Target: 5'- aGUAUaucgGCGAGUCGgaucaaGCGACgggcgcgagCGCGAGGCu -3' miRNA: 3'- -CGUG----UGCUUAGC------CGCUGa--------GCGCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 19497 | 0.66 | 0.897456 |
Target: 5'- -aACGCGAugAUCGGCaacuauauccaguccGACaacuacaUCGCGggGCg -3' miRNA: 3'- cgUGUGCU--UAGCCG---------------CUG-------AGCGCuuUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 7497 | 0.66 | 0.915702 |
Target: 5'- cGCGCGCGuugaucacgCGGCGACggcCGuCGAucACg -3' miRNA: 3'- -CGUGUGCuua------GCCGCUGa--GC-GCUu-UG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 16996 | 0.66 | 0.902385 |
Target: 5'- cGCGCACa---CGGCGACgaUCGcCGAcGCg -3' miRNA: 3'- -CGUGUGcuuaGCCGCUG--AGC-GCUuUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 22854 | 0.66 | 0.909186 |
Target: 5'- aGUACACGAua-GGCGGCgggaagggCGUcGAGCg -3' miRNA: 3'- -CGUGUGCUuagCCGCUGa-------GCGcUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 8894 | 0.66 | 0.902385 |
Target: 5'- cGCGCGCGAcacaCGGCaaccGCUCGaCGcGACa -3' miRNA: 3'- -CGUGUGCUua--GCCGc---UGAGC-GCuUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 33126 | 0.66 | 0.915702 |
Target: 5'- cCGC-CGAcgCGGCGGCaUCGUGcgcGGCg -3' miRNA: 3'- cGUGuGCUuaGCCGCUG-AGCGCu--UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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