miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 41801 0.66 0.902385
Target:  5'- uUAUGCGuccGAUCGGUGGCaUCGUGAuuGGCg -3'
miRNA:   3'- cGUGUGC---UUAGCCGCUG-AGCGCU--UUG- -5'
24861 3' -51.2 NC_005284.1 + 16996 0.66 0.902385
Target:  5'- cGCGCACa---CGGCGACgaUCGcCGAcGCg -3'
miRNA:   3'- -CGUGUGcuuaGCCGCUG--AGC-GCUuUG- -5'
24861 3' -51.2 NC_005284.1 + 8894 0.66 0.902385
Target:  5'- cGCGCGCGAcacaCGGCaaccGCUCGaCGcGACa -3'
miRNA:   3'- -CGUGUGCUua--GCCGc---UGAGC-GCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 9903 0.66 0.915702
Target:  5'- aGCGCGcCGAagcGUCGcucGCG-CUCGCGcAGCa -3'
miRNA:   3'- -CGUGU-GCU---UAGC---CGCuGAGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 6998 0.66 0.915702
Target:  5'- cGCGCuCGAcaUGGCG-CUCGCcGGGCu -3'
miRNA:   3'- -CGUGuGCUuaGCCGCuGAGCGcUUUG- -5'
24861 3' -51.2 NC_005284.1 + 30264 0.66 0.909186
Target:  5'- cGgGCGCGuucguucgcuGUCGaGUGGCUCGCGcGAUa -3'
miRNA:   3'- -CgUGUGCu---------UAGC-CGCUGAGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 46637 0.67 0.872411
Target:  5'- uGCGgACGuagUGGCGACaCGCGGcaaGACg -3'
miRNA:   3'- -CGUgUGCuuaGCCGCUGaGCGCU---UUG- -5'
24861 3' -51.2 NC_005284.1 + 44413 0.67 0.864253
Target:  5'- aCGCGCGAuuacugccucGUUGGCGACuagauUCGCGuGAUc -3'
miRNA:   3'- cGUGUGCU----------UAGCCGCUG-----AGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 34042 0.67 0.864253
Target:  5'- aGCGCAaGGAUCGucgcuggcuucGCGGCUCG-GAAAUa -3'
miRNA:   3'- -CGUGUgCUUAGC-----------CGCUGAGCgCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 18791 0.67 0.887942
Target:  5'- cGUGCgAUGAGUCGGaucgGAUcacgcugauuguUCGCGAAGCg -3'
miRNA:   3'- -CGUG-UGCUUAGCCg---CUG------------AGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 45911 0.67 0.887942
Target:  5'- cGCGCGCGAugcgcagcacGUCGuucuGCGcaaUCGCGAAAUc -3'
miRNA:   3'- -CGUGUGCU----------UAGC----CGCug-AGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 45445 0.67 0.871607
Target:  5'- gGCGuCGCGAuuGUCgGGCGACcaguugcUCGCGGcaauGACa -3'
miRNA:   3'- -CGU-GUGCU--UAG-CCGCUG-------AGCGCU----UUG- -5'
24861 3' -51.2 NC_005284.1 + 4350 0.67 0.88031
Target:  5'- cCGCcgGCGAGaaGGCG-CUCGCuGAAGCa -3'
miRNA:   3'- cGUG--UGCUUagCCGCuGAGCG-CUUUG- -5'
24861 3' -51.2 NC_005284.1 + 21165 0.67 0.887942
Target:  5'- cGCGCGCGGcUCGaGCaacGGCUcaucgagcaCGCGGAGCc -3'
miRNA:   3'- -CGUGUGCUuAGC-CG---CUGA---------GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 40757 0.67 0.88031
Target:  5'- uGCAUGCGAuuUUGGcCGACUgUGuCGAGGCa -3'
miRNA:   3'- -CGUGUGCUu-AGCC-GCUGA-GC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 1222 0.67 0.88031
Target:  5'- cGCACGCccccagugCGGaCGACg-GCGAAACa -3'
miRNA:   3'- -CGUGUGcuua----GCC-GCUGagCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 45558 0.67 0.88031
Target:  5'- cCGCGCGcGUCaGCGcCUCGaCGAGAUu -3'
miRNA:   3'- cGUGUGCuUAGcCGCuGAGC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 47942 0.67 0.887942
Target:  5'- aGCACACGAucgAUCGcGCGcgccaACUCgguGCGAAu- -3'
miRNA:   3'- -CGUGUGCU---UAGC-CGC-----UGAG---CGCUUug -5'
24861 3' -51.2 NC_005284.1 + 9419 0.67 0.887942
Target:  5'- gGCAuCGUGAAacUCGGCGugucGCUCGCGGccgGGCg -3'
miRNA:   3'- -CGU-GUGCUU--AGCCGC----UGAGCGCU---UUG- -5'
24861 3' -51.2 NC_005284.1 + 9495 0.67 0.88031
Target:  5'- cGCAgGCGGcgacagcguggGUCGGCGcccggcgagcGCUCGUcgagGAGACg -3'
miRNA:   3'- -CGUgUGCU-----------UAGCCGC----------UGAGCG----CUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.