Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 9419 | 0.67 | 0.887942 |
Target: 5'- gGCAuCGUGAAacUCGGCGugucGCUCGCGGccgGGCg -3' miRNA: 3'- -CGU-GUGCUU--AGCCGC----UGAGCGCU---UUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 11043 | 0.68 | 0.847187 |
Target: 5'- gGCuuGCGAGUCgcaaaGGCuGACU-GCGAGGCa -3' miRNA: 3'- -CGugUGCUUAG-----CCG-CUGAgCGCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 23568 | 0.68 | 0.838295 |
Target: 5'- aGCGCAuCGGcaacgucgCGGCGAUgcuaCGCGAGAUc -3' miRNA: 3'- -CGUGU-GCUua------GCCGCUGa---GCGCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 7260 | 0.68 | 0.838295 |
Target: 5'- aGCGCACG-GUCGGCacCUCGaCGccGAACa -3' miRNA: 3'- -CGUGUGCuUAGCCGcuGAGC-GC--UUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 36742 | 0.68 | 0.8189 |
Target: 5'- cCAC-CGGAUCGGCGucgaagcGCUCgGCGAGc- -3' miRNA: 3'- cGUGuGCUUAGCCGC-------UGAG-CGCUUug -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 15302 | 0.68 | 0.819845 |
Target: 5'- cCGCACGAugugCGggcgcaGCGGCaUCGCGAAAUg -3' miRNA: 3'- cGUGUGCUua--GC------CGCUG-AGCGCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 3478 | 0.68 | 0.819845 |
Target: 5'- aGCACACGA--CGGCuacGGCUgCGCaGGACg -3' miRNA: 3'- -CGUGUGCUuaGCCG---CUGA-GCGcUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 45792 | 0.68 | 0.819845 |
Target: 5'- uGCGCAgGcGUCGGCauGCUCgGCGAAGg -3' miRNA: 3'- -CGUGUgCuUAGCCGc-UGAG-CGCUUUg -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 50247 | 0.68 | 0.819845 |
Target: 5'- -gACGCGAA-CGGCGACgc-UGAAGCg -3' miRNA: 3'- cgUGUGCUUaGCCGCUGagcGCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 49259 | 0.68 | 0.819845 |
Target: 5'- cCGCGCGAucaggaGGCGACgUGaCGAAGCg -3' miRNA: 3'- cGUGUGCUuag---CCGCUGaGC-GCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 10391 | 0.68 | 0.847187 |
Target: 5'- uGCGCACGAAgcaagaGGCG--UCGCGGGc- -3' miRNA: 3'- -CGUGUGCUUag----CCGCugAGCGCUUug -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 30424 | 0.68 | 0.829178 |
Target: 5'- cGUGCGCGA--CGGCGAggugcuguUUCGCGAGu- -3' miRNA: 3'- -CGUGUGCUuaGCCGCU--------GAGCGCUUug -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 45068 | 0.68 | 0.847187 |
Target: 5'- gGCGgGCGAGcgCGGCuacgcGCUCGUGAAGu -3' miRNA: 3'- -CGUgUGCUUa-GCCGc----UGAGCGCUUUg -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 2488 | 0.68 | 0.847187 |
Target: 5'- cCAgACGGAaCGcGUGuuCUCGCGAAGCa -3' miRNA: 3'- cGUgUGCUUaGC-CGCu-GAGCGCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 41956 | 0.68 | 0.810305 |
Target: 5'- cGCAgACGAagaGUCcGCGGg-CGCGAAGCg -3' miRNA: 3'- -CGUgUGCU---UAGcCGCUgaGCGCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 18000 | 0.69 | 0.790652 |
Target: 5'- gGCGCGCGcagucaAGUCGGuCGACg-GCGAcACg -3' miRNA: 3'- -CGUGUGC------UUAGCC-GCUGagCGCUuUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 23280 | 0.69 | 0.768241 |
Target: 5'- gGCGCGCGGugccgauAUCGGCGugUaucccggcgucguCGaCGGAACu -3' miRNA: 3'- -CGUGUGCU-------UAGCCGCugA-------------GC-GCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 10623 | 0.69 | 0.780562 |
Target: 5'- cCGCuuCGuGUCGGCGACgagcggCGgCGAAGCg -3' miRNA: 3'- cGUGu-GCuUAGCCGCUGa-----GC-GCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 10070 | 0.69 | 0.790652 |
Target: 5'- aGCGaGCGGAacgcgCGGCGAC-CGCGAccgcGGCg -3' miRNA: 3'- -CGUgUGCUUa----GCCGCUGaGCGCU----UUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 9552 | 0.69 | 0.780562 |
Target: 5'- aGCaACACGAggCGGCGcaggcagcGCUCGCcaAAGCg -3' miRNA: 3'- -CG-UGUGCUuaGCCGC--------UGAGCGc-UUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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