miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 24341 1.13 0.001469
Target:  5'- aGCACACGAAUCGGCGACUCGCGAAACa -3'
miRNA:   3'- -CGUGUGCUUAGCCGCUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 11822 0.78 0.301943
Target:  5'- cGCGCGCGAGcgCGGCuaucucgagcagcGGCUCGCGuuGCa -3'
miRNA:   3'- -CGUGUGCUUa-GCCG-------------CUGAGCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 185 0.78 0.310471
Target:  5'- cGgACugGAuuGUCGGCGAggCGCGggGCa -3'
miRNA:   3'- -CgUGugCU--UAGCCGCUgaGCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 9845 0.78 0.318382
Target:  5'- gGCACGCccuacgCGGCGaucaucGCUCGCGAGACg -3'
miRNA:   3'- -CGUGUGcuua--GCCGC------UGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 11586 0.78 0.318382
Target:  5'- -gACGCGGAgcUCGGCGACUaCGCGGccgAGCg -3'
miRNA:   3'- cgUGUGCUU--AGCCGCUGA-GCGCU---UUG- -5'
24861 3' -51.2 NC_005284.1 + 4265 0.74 0.475054
Target:  5'- cGCAagaGCGg--CGGCGACUCGCacccGGAGCa -3'
miRNA:   3'- -CGUg--UGCuuaGCCGCUGAGCG----CUUUG- -5'
24861 3' -51.2 NC_005284.1 + 47775 0.73 0.560884
Target:  5'- aGCAgAuCGAggCGGCG-CUCGCGGAGg -3'
miRNA:   3'- -CGUgU-GCUuaGCCGCuGAGCGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 14966 0.72 0.594255
Target:  5'- cGCGCGCcguUCGGCGGCUuccugUGCGAcACg -3'
miRNA:   3'- -CGUGUGcuuAGCCGCUGA-----GCGCUuUG- -5'
24861 3' -51.2 NC_005284.1 + 7890 0.72 0.604336
Target:  5'- aGUGCGCGAgccgacgGUCGGCGAC-CGCauguucuggaucGAAGCg -3'
miRNA:   3'- -CGUGUGCU-------UAGCCGCUGaGCG------------CUUUG- -5'
24861 3' -51.2 NC_005284.1 + 31268 0.72 0.605457
Target:  5'- uUugGCGuGUCGGCGAuCagGCGGAACa -3'
miRNA:   3'- cGugUGCuUAGCCGCU-GagCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 9240 0.72 0.605457
Target:  5'- aCGCGCcAcgCGGCGGCauagagCGCGGAGCa -3'
miRNA:   3'- cGUGUGcUuaGCCGCUGa-----GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 29847 0.72 0.616683
Target:  5'- aGCGCAUG-AUCGGCGACggaGgGAucuGCg -3'
miRNA:   3'- -CGUGUGCuUAGCCGCUGag-CgCUu--UG- -5'
24861 3' -51.2 NC_005284.1 + 41006 0.72 0.627924
Target:  5'- -uGCugGAA-CGGCGAUcgUCGCGGAGg -3'
miRNA:   3'- cgUGugCUUaGCCGCUG--AGCGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 10193 0.72 0.639168
Target:  5'- uGCugGCGGcgGUCGGCGGCUuacCGgGAAu- -3'
miRNA:   3'- -CGugUGCU--UAGCCGCUGA---GCgCUUug -5'
24861 3' -51.2 NC_005284.1 + 22563 0.71 0.661626
Target:  5'- uGCGCAuCGAagaagagcuAUCGGCGGCgcacauucgucUCGCGAAuGCg -3'
miRNA:   3'- -CGUGU-GCU---------UAGCCGCUG-----------AGCGCUU-UG- -5'
24861 3' -51.2 NC_005284.1 + 11477 0.71 0.661626
Target:  5'- --uCGCGAucagcaGGCGAUUCGCGGGAUg -3'
miRNA:   3'- cguGUGCUuag---CCGCUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 6836 0.71 0.661626
Target:  5'- cGCAC-CGAGUUGGCG-CgCGCGAu-- -3'
miRNA:   3'- -CGUGuGCUUAGCCGCuGaGCGCUuug -5'
24861 3' -51.2 NC_005284.1 + 21303 0.71 0.672818
Target:  5'- aGCACaacgGCGAggCgguucaaugcgGGCGACUgGCGggGCg -3'
miRNA:   3'- -CGUG----UGCUuaG-----------CCGCUGAgCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 14621 0.71 0.672818
Target:  5'- aCGCACG---UGGCGGUUCGCGAGAUa -3'
miRNA:   3'- cGUGUGCuuaGCCGCUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 31356 0.71 0.695069
Target:  5'- aCACGCGcuGUCGGUGGC-CGUGGAuuGCa -3'
miRNA:   3'- cGUGUGCu-UAGCCGCUGaGCGCUU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.