miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 31356 0.71 0.695069
Target:  5'- aCACGCGcuGUCGGUGGC-CGUGGAuuGCa -3'
miRNA:   3'- cGUGUGCu-UAGCCGCUGaGCGCUU--UG- -5'
24861 3' -51.2 NC_005284.1 + 17489 0.7 0.727939
Target:  5'- gGCGC-CGggUCGGUGG-UCGCGucGGCc -3'
miRNA:   3'- -CGUGuGCuuAGCCGCUgAGCGCu-UUG- -5'
24861 3' -51.2 NC_005284.1 + 18682 0.7 0.738712
Target:  5'- cGCACGcCGAAUC-GCGACgaCGCGAc-- -3'
miRNA:   3'- -CGUGU-GCUUAGcCGCUGa-GCGCUuug -5'
24861 3' -51.2 NC_005284.1 + 34857 0.7 0.738712
Target:  5'- gGCGCACGAuugggAUCGGCucGACaUCGCcguaGAACa -3'
miRNA:   3'- -CGUGUGCU-----UAGCCG--CUG-AGCGc---UUUG- -5'
24861 3' -51.2 NC_005284.1 + 48172 0.7 0.745123
Target:  5'- cGCugGCGAAgugacgcccguugCGGUGacaGCUCGCGcAGCg -3'
miRNA:   3'- -CGugUGCUUa------------GCCGC---UGAGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 11240 0.7 0.749373
Target:  5'- -aGCACGuguGUCGaccaacgcggcaGCGGCUCGCGcgGCg -3'
miRNA:   3'- cgUGUGCu--UAGC------------CGCUGAGCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 45649 0.69 0.75991
Target:  5'- gGCugGCGGcucGUCGGUG---CGCGAGGCg -3'
miRNA:   3'- -CGugUGCU---UAGCCGCugaGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 23280 0.69 0.768241
Target:  5'- gGCGCGCGGugccgauAUCGGCGugUaucccggcgucguCGaCGGAACu -3'
miRNA:   3'- -CGUGUGCU-------UAGCCGCugA-------------GC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 33157 0.69 0.780562
Target:  5'- cGCACGCugcUCGGCGuCgagCGCGgcGCg -3'
miRNA:   3'- -CGUGUGcuuAGCCGCuGa--GCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 10623 0.69 0.780562
Target:  5'- cCGCuuCGuGUCGGCGACgagcggCGgCGAAGCg -3'
miRNA:   3'- cGUGu-GCuUAGCCGCUGa-----GC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 9552 0.69 0.780562
Target:  5'- aGCaACACGAggCGGCGcaggcagcGCUCGCcaAAGCg -3'
miRNA:   3'- -CG-UGUGCUuaGCCGC--------UGAGCGc-UUUG- -5'
24861 3' -51.2 NC_005284.1 + 40175 0.69 0.780562
Target:  5'- aGCGCGCGAGcguUCGGCGccggaacacuUUCGCGccGACg -3'
miRNA:   3'- -CGUGUGCUU---AGCCGCu---------GAGCGCu-UUG- -5'
24861 3' -51.2 NC_005284.1 + 49096 0.69 0.790652
Target:  5'- cCACguGCGAAUcCGGCGGgucaacCUCGCGAAu- -3'
miRNA:   3'- cGUG--UGCUUA-GCCGCU------GAGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 10070 0.69 0.790652
Target:  5'- aGCGaGCGGAacgcgCGGCGAC-CGCGAccgcGGCg -3'
miRNA:   3'- -CGUgUGCUUa----GCCGCUGaGCGCU----UUG- -5'
24861 3' -51.2 NC_005284.1 + 18000 0.69 0.790652
Target:  5'- gGCGCGCGcagucaAGUCGGuCGACg-GCGAcACg -3'
miRNA:   3'- -CGUGUGC------UUAGCC-GCUGagCGCUuUG- -5'
24861 3' -51.2 NC_005284.1 + 19133 0.69 0.790652
Target:  5'- cGCGCGCGAA-CGGCa--UCGUGAaccuGACg -3'
miRNA:   3'- -CGUGUGCUUaGCCGcugAGCGCU----UUG- -5'
24861 3' -51.2 NC_005284.1 + 43619 0.69 0.800571
Target:  5'- cGCGCGCGg--CGGCcGCggCGCGAGcuGCg -3'
miRNA:   3'- -CGUGUGCuuaGCCGcUGa-GCGCUU--UG- -5'
24861 3' -51.2 NC_005284.1 + 47187 0.69 0.800571
Target:  5'- ---uGCGAuuuGUCGGCGAacgugaCGCGGAACa -3'
miRNA:   3'- cgugUGCU---UAGCCGCUga----GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 42757 0.69 0.804487
Target:  5'- cCGCGCGAgGUCGGCGAUcaugcugucaaucagUCcGCGGAAa -3'
miRNA:   3'- cGUGUGCU-UAGCCGCUG---------------AG-CGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 41956 0.68 0.810305
Target:  5'- cGCAgACGAagaGUCcGCGGg-CGCGAAGCg -3'
miRNA:   3'- -CGUgUGCU---UAGcCGCUgaGCGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.